Variant report

Variant	rs4913533
Chromosome Location	chr12:67614086-67614087
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:67462356..67464929-chr12:67612276..67614643,4	MCF-7	breast:
2	chr12:67478228..67481093-chr12:67612107..67614735,2	MCF-7	breast:
3	chr12:67419005..67419983-chr12:67613517..67614351,5	MCF-7	breast:
4	chr12:67270133..67270911-chr12:67613617..67614322,2	MCF-7	breast:
5	chr12:67555087..67555972-chr12:67613605..67614523,4	MCF-7	breast:
6	chr12:67297065..67298731-chr12:67613597..67614634,5	MCF-7	breast:
7	chr12:67461970..67464126-chr12:67613627..67616545,3	MCF-7	breast:
8	chr12:67461087..67461964-chr12:67614042..67614668,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000256248	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10735940	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748069	0.85[CHB][hapmap]
rs10748071	0.85[CHB][hapmap]
rs10748074	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10784611	0.85[CHB][hapmap]
rs10784614	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10878569	0.85[CHB][hapmap]
rs10878576	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10878577	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10878578	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10878579	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10878580	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10878581	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10878585	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11176589	0.85[CHB][hapmap]
rs11176591	0.85[CHB][hapmap]
rs11176597	0.85[CHB][hapmap]
rs11176627	1.00[ASN][1000 genomes]
rs11176629	1.00[ASN][1000 genomes]
rs11176633	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12146816	0.87[ASN][1000 genomes]
rs1370405	0.97[ASN][1000 genomes]
rs1370406	1.00[ASN][1000 genomes]
rs1569021	0.82[CHB][hapmap]
rs1595334	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1595337	1.00[ASN][1000 genomes]
rs1657978	1.00[ASN][1000 genomes]
rs1657983	1.00[ASN][1000 genomes]
rs1866068	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1866255	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1866256	0.90[ASN][1000 genomes]
rs1898454	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1898610	1.00[ASN][1000 genomes]
rs1898611	1.00[ASN][1000 genomes]
rs1918140	0.85[CHB][hapmap]
rs2033728	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2043800	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2164746	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2870942	1.00[ASN][1000 genomes]
rs2917847	1.00[ASN][1000 genomes]
rs2917849	1.00[ASN][1000 genomes]
rs4244072	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4397936	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4603385	0.85[CHB][hapmap]
rs4913532	1.00[ASN][1000 genomes]
rs7135360	0.85[CHB][hapmap]
rs775313	1.00[ASN][1000 genomes]
rs7968916	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7969451	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv541524	chr12:67311057-67700349	Strong transcription Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv559212	chr12:67373549-67850925	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1054111	chr12:67556780-67865542	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv1042328	chr12:67573942-67617106	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv899218	chr12:67612129-67643840	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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