Variant report

Variant	esv3512866
Chromosome Location	chr1:158960178-158967276
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:27)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:27 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BATF	chr1:158966067-158966420	GM12878	blood:	n/a	n/a
2	BATF	chr1:158966132-158966379	GM12878	blood:	n/a	n/a
3	BCL11A	chr1:158966081-158966327	GM12878	blood:	n/a	n/a
4	BCLAF1	chr1:158966155-158966402	GM12878	blood:	n/a	n/a
5	BHLHE40	chr1:158966157-158966444	GM12878	blood:	n/a	n/a
6	CHD2	chr1:158966232-158966388	GM12878	blood:	n/a	n/a
7	EBF1	chr1:158966082-158966463	GM12878	blood:	n/a	n/a
8	EBF1	chr1:158966040-158966372	GM12878	blood:	n/a	n/a
9	EBF1	chr1:158966107-158966403	GM12878	blood:	n/a	n/a
10	EP300	chr1:158966113-158966362	GM12878	blood:	n/a	n/a
11	EP300	chr1:158967059-158967085	GM12878	blood:	n/a	n/a
12	EP300	chr1:158966176-158966423	GM12878	blood:	n/a	n/a
13	FOS	chr1:158962797-158962949	MCF10A-Er-Src	breast:	n/a	n/a
14	IRF4	chr1:158966111-158966465	GM12878	blood:	n/a	n/a
15	MAX	chr1:158966142-158966334	GM12878	blood:	n/a	n/a
16	MAX	chr1:158960618-158960651	NB4	blood:	n/a	chr1:158960627-158960637
17	PAX5	chr1:158960690-158960889	GM12878	blood:	n/a	n/a
18	PAX5	chr1:158960678-158960944	GM12878	blood:	n/a	n/a
19	POLR2A	chr1:158966646-158966719	Gliobla	brain:	n/a	n/a
20	POLR2A	chr1:158962487-158962490	K562	blood:	n/a	n/a
21	RUNX3	chr1:158966018-158966434	GM12878	blood:	n/a	n/a
22	RUNX3	chr1:158966039-158966382	GM12878	blood:	n/a	n/a
23	SMC3	chr1:158966147-158966261	GM12878	blood:	n/a	n/a
24	TBL1XR1	chr1:158966221-158966421	GM12878	blood:	n/a	n/a
25	USF2	chr1:158966173-158966460	GM12878	blood:	n/a	n/a
26	YY1	chr1:158966037-158966302	GM12892	blood:	n/a	n/a
27	ZNF384	chr1:158966294-158966423	GM12878	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:158954353..158956986-chr1:158959866..158962635,3	K562	blood:
2	chr1:158954353..158956986-chr1:158959866..158962393,2	K562	blood:
3	chr1:158640177..158642154-chr1:158966970..158969167,2	K562	blood:

No data

Variant related genes	Relation type
IFI16	TF binding region

Extended variants
information (count: 292 )
Associated
traits (count: 108 )

Variant overlapped rSNPs/rCNVs (count:292 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs545632232	chr1:158960193-158960194	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs563735063	chr1:158960200-158960201	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs375409854	chr1:158960223-158960224	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs77393202	chr1:158960226-158960227	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs74230311	chr1:158960256-158960257	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs561240680	chr1:158960260-158960261	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs528525419	chr1:158960308-158960309	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs188604548	chr1:158960321-158960322	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs374252857	chr1:158960442-158960443	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs856148	chr1:158960481-158960482	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs77816999	chr1:158960488-158960489	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs550118856	chr1:158960494-158960495	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs74197360	chr1:158960513-158960514	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs139145439	chr1:158960594-158960595	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs74523013	chr1:158960611-158960612	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs79398898	chr1:158960631-158960632	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs149941694	chr1:158960639-158960640	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs181358245	chr1:158960659-158960660	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs186743095	chr1:158960690-158960691	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs533583971	chr1:158960740-158960741	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs192041089	chr1:158960741-158960742	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs559483888	chr1:158960749-158960750	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs181748282	chr1:158960774-158960775	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs537555327	chr1:158960777-158960778	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs187204009	chr1:158960788-158960789	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs566702454	chr1:158960792-158960793	ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs575774255	chr1:158960820-158960821	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs543287320	chr1:158960866-158960867	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs561605934	chr1:158960867-158960868	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs573269169	chr1:158960905-158960906	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs139636793	chr1:158960906-158960907	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs564946549	chr1:158960936-158960937	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs192037692	chr1:158960960-158960961	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs144185006	chr1:158960977-158960978	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs550816122	chr1:158960986-158960987	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs146549994	chr1:158961048-158961049	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs550881927	chr1:158961049-158961050	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs77108242	chr1:158961076-158961077	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs2820190	chr1:158961089-158961090	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs558993286	chr1:158961093-158961094	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs3049682	chr1:158961112-158961113	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs548071768	chr1:158961158-158961159	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs566476244	chr1:158961160-158961161	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs372570926	chr1:158961170-158961171	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs533840922	chr1:158961249-158961250	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs182093964	chr1:158961309-158961310	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs572475378	chr1:158961359-158961360	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs570370104	chr1:158961361-158961362	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs375528105	chr1:158961382-158961383	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs537919527	chr1:158961423-158961424	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:108)

Disease	PMID	Source
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Liposarcoma	21253554	CNVD
Non-small cell lung cancer	21385341	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	18698080	CNVD
Melanoma	18172304	CNVD
Cervical cancer	21062161	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	21183584	CNVD
Multiple myeloma	16461302	CNVD
Lung cancer	18438408	CNVD
Rett syndrome	21593744	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Medulloblastoma	21979893	CNVD
Systemic lupus erythematosus	21956041	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17133270	CNVD
Non-small cell lung cancer	21829676	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Non-small cell lung cancer	21044232	CNVD
Cervical cancer	21063398	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	20632083	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	21264507	CNVD
Multiple myeloma	21628407	CNVD
Cancer	16751803	CNVD
Prostate cancer	16705090	CNVD
Neuroblastoma	19435921	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16461572	CNVD
Intracranial tumor	16823260	CNVD
Medulloblastoma	18056178	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Neuroblastoma	21899760	CNVD
Breast cancer	17899364	CNVD
Bladder cancer	19088036	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	21858162	CNVD
Retinoblastoma	19183342	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	16608533	CNVD
Ewing''s sarcoma	22429812	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Type 2 diabetes	19141583	CNVD
Chordoma	18071362	CNVD
Hepatocellular carcinoma	18803288	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17001317	CNVD
Urothelial carcinoma	21177765	CNVD
Burkitt''s lymphoma	19759907	CNVD
Acute myeloid leukemia	21251322	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21509527	CNVD
Bladder cancer	21909424	CNVD
Acute myeloid leukemia	20729466	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Testicular germ cell tumor	18059402	CNVD
Trisomy 5 syndrome	21098271	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21611746	CNVD
Neuroblastoma	18923191	CNVD
Systemic lupus erythematosus	19220326	CNVD
Systemic lupus erythematosus	19287148	CNVD
Glomerulonephritis	19341492	CNVD
Systemic lupus erythematosus	18559452	CNVD
Systemic autoimmune disease	17597778	CNVD
Glomerulonephritis	17008540	CNVD
Glomerulonephritis	16482158	CNVD
Soft tissue tumor	16732325	CNVD
Cancer	17060936	CNVD
Lung cancer	16740712	CNVD
Breast cancer	21045282	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Cancer	20164920	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ewing''s sarcoma	17952124	CNVD
Follicular lymphoma	18703704	CNVD
Pancreatic cancer	17952125	CNVD
Myelofibrosis	22110671	CNVD
Intracranial ependymoma	16609018	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158950800-158965600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr1:158951200-158965600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr1:158953400-158960200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr1:158953600-158965400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr1:158953600-158965600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:158953800-158960400	Weak transcription	Primary B cells from cord blood	blood
7	chr1:158954000-158960600	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr1:158954400-158968400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr1:158955000-158968200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr1:158955800-158963600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr1:158956600-158961400	Weak transcription	Primary T cells from cord blood	blood
12	chr1:158956600-158966000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr1:158957000-158965800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr1:158957600-158961000	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr1:158958200-158960800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr1:158959400-158961000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr1:158960200-158960800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr1:158960400-158961000	ZNF genes & repeats	Primary B cells from cord blood	blood
19	chr1:158960600-158963200	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr1:158960800-158965600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr1:158960800-158975400	Weak transcription	Spleen	Spleen
22	chr1:158961000-158961800	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr1:158961000-158965800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr1:158961000-158968200	Weak transcription	Primary B cells from cord blood	blood
25	chr1:158961400-158963000	Strong transcription	Primary T cells from cord blood	blood
26	chr1:158961800-158962000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
27	chr1:158961800-158962200	Enhancers	Placenta	Placenta
28	chr1:158962000-158965600	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr1:158963000-158968200	Weak transcription	Primary T cells from cord blood	blood
30	chr1:158963200-158965600	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr1:158963600-158965400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr1:158964800-158965000	ZNF genes & repeats	Fetal Kidney	kidney
33	chr1:158965000-158968200	Weak transcription	Fetal Kidney	kidney
34	chr1:158965400-158966000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
35	chr1:158965400-158968800	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr1:158965600-158965800	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr1:158965600-158966800	Enhancers	Primary T cells fromperipheralblood	blood
38	chr1:158965600-158966800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr1:158965600-158968000	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr1:158965600-158969000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr1:158965600-158969000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr1:158965800-158966000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr1:158965800-158966000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
44	chr1:158965800-158966200	Enhancers	Primary B cells from peripheral blood	blood
45	chr1:158965800-158966200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr1:158965800-158968200	Enhancers	Primary T helper naive cells from peripheral blood	blood
47	chr1:158965800-158968600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr1:158966000-158966200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
49	chr1:158966000-158966400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
50	chr1:158966000-158966600	Enhancers	GM12878-XiMat	blood

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