Variant report

Variant	rs561240680
Chromosome Location	chr1:158960260-158960261
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002401	chr1:158712627-158972031	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv3376764	chr1:158761947-158998617	Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3369957	chr1:158915589-159003393	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv3176	chr1:158955373-158986568	Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	esv3512862	chr1:158960096-158966373	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1838509	chr1:158960112-158967046	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3512866	chr1:158960178-158967276	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158950800-158965600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr1:158951200-158965600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr1:158953600-158965400	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr1:158953600-158965600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr1:158953800-158960400	Weak transcription	Primary B cells from cord blood	blood
6	chr1:158954000-158960600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr1:158954400-158968400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr1:158955000-158968200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr1:158955800-158963600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr1:158956600-158961400	Weak transcription	Primary T cells from cord blood	blood
11	chr1:158956600-158966000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr1:158957000-158965800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr1:158957600-158961000	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr1:158958200-158960800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr1:158959400-158961000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr1:158960200-158960800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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