Variant report

Variant	esv3515654
Chromosome Location	chr14:80105199-80116147
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 354 )
Associated
traits (count: 63 )

Variant overlapped rSNPs/rCNVs (count:354 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs115773522	chr14:80105228-80105229	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs542435128	chr14:80105233-80105234	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs529205852	chr14:80105237-80105238	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs186954529	chr14:80105304-80105305	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs142890725	chr14:80105310-80105311	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs111644296	chr14:80105343-80105344	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs576043244	chr14:80105355-80105356	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs221472	chr14:80105357-80105358	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs74493407	chr14:80105368-80105369	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs191698833	chr14:80105372-80105373	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs540489133	chr14:80105394-80105395	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs75401508	chr14:80105410-80105411	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs577490942	chr14:80105428-80105429	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs373380956	chr14:80105444-80105445	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs138058017	chr14:80105452-80105453	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs574277399	chr14:80105461-80105462	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs375231221	chr14:80105601-80105602	Weak transcription Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
18	rs531837209	chr14:80105604-80105605	Weak transcription Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
19	rs79478539	chr14:80105613-80105614	Weak transcription Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
20	rs221471	chr14:80105624-80105625	Weak transcription Enhancers Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs527703067	chr14:80105646-80105647	Weak transcription Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs547641835	chr14:80105673-80105674	Weak transcription Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
23	rs570634236	chr14:80105712-80105713	Weak transcription Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs553619724	chr14:80105714-80105715	Weak transcription Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
25	rs572902086	chr14:80105735-80105736	Weak transcription Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
26	rs221470	chr14:80105738-80105739	Weak transcription Enhancers Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs183987456	chr14:80105789-80105790	Weak transcription Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs569563638	chr14:80105791-80105792	Weak transcription Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
29	rs535132617	chr14:80105799-80105800	Weak transcription Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs555057328	chr14:80105817-80105818	Weak transcription Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
31	rs377402308	chr14:80105828-80105829	Weak transcription Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs571677521	chr14:80105869-80105870	Weak transcription Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs373320206	chr14:80105874-80105875	Weak transcription Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs201742012	chr14:80105952-80105953	Weak transcription Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs540578193	chr14:80105959-80105960	Weak transcription Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs144097673	chr14:80105987-80105988	Weak transcription Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs60394402	chr14:80105997-80105998	Weak transcription Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs557766174	chr14:80106019-80106020	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs73327961	chr14:80106076-80106077	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs546522501	chr14:80106091-80106092	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs140611087	chr14:80106116-80106117	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs576721149	chr14:80106135-80106136	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs6574516	chr14:80106197-80106198	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs187235800	chr14:80106199-80106200	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs8021855	chr14:80106220-80106221	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs541054379	chr14:80106341-80106342	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs565123243	chr14:80106450-80106451	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs564548142	chr14:80106463-80106464	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs533076488	chr14:80106494-80106495	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs550054242	chr14:80106513-80106514	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:63)

Disease	PMID	Source
Esophageal cancer	21851588	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Non-small cell lung cancer	21044232	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Medulloblastoma	21979893	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Hepatocellular carcinoma	22174799	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	17899364	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Renal cell carcinoma	21668985	CNVD
Chronic myeloid leukemia	20724749	CNVD
Wilms tumour	21544195	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	21858162	CNVD
Lung cancer	18438408	CNVD
Colorectal cancer	16272173	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Colorectal cancer	16774939	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Neuroblastoma	18923191	CNVD
Barrett''s syndrome	19417022	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Basal cell lymphoma	17053054	CNVD
cataract	16735990	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Multiple myeloma	17550852	CNVD
Glioblastoma multiforme	21922591	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16608533	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
small cell lung cancer	20016488	CNVD
Developmental delay	21147756	CNVD
Breast cancer	21509527	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	17603634	CNVD
Glioblastoma	21080181	CNVD
Gastric cancer	16891809	CNVD
Breast cancer	17133270	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80104200-80105400	Enhancers	Pancreas	Pancrea
2	chr14:80104400-80105600	Enhancers	Fetal Brain Male	brain
3	chr14:80104600-80106000	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr14:80105000-80105200	Enhancers	Stomach Smooth Muscle	stomach
5	chr14:80105000-80105400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
6	chr14:80105000-80105600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr14:80105000-80105600	Enhancers	Fetal Brain Female	brain
8	chr14:80105000-80105800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr14:80105000-80106400	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr14:80105000-80108600	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr14:80105200-80105800	Enhancers	HSMMtube	muscle
12	chr14:80105200-80106000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr14:80105400-80105600	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr14:80105400-80106200	Weak transcription	Pancreas	Pancrea
15	chr14:80105600-80106000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr14:80105600-80106000	Active TSS	Skeletal Muscle Female	skeletal muscle
17	chr14:80106000-80106200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr14:80106000-80106600	Enhancers	Stomach Smooth Muscle	stomach
19	chr14:80106000-80108000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr14:80106000-80109400	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr14:80106200-80106400	Enhancers	Pancreas	Pancrea
22	chr14:80106200-80109200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr14:80106400-80107800	Weak transcription	Pancreas	Pancrea
24	chr14:80106600-80112600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr14:80107800-80108000	Enhancers	Pancreas	Pancrea
26	chr14:80108000-80109000	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr14:80108400-80110200	Enhancers	Dnd41	blood
28	chr14:80109200-80109800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr14:80109400-80110000	Enhancers	Pancreatic Islets	Pancreatic Islet
30	chr14:80110000-80114600	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr14:80110800-80111400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr14:80112600-80113200	Enhancers	Stomach Smooth Muscle	stomach
33	chr14:80112600-80113800	Enhancers	Adipose Nuclei	Adipose
34	chr14:80112800-80113200	Enhancers	Rectal Smooth Muscle	rectum
35	chr14:80113000-80113400	Enhancers	Colon Smooth Muscle	Colon
36	chr14:80113200-80135400	Weak transcription	Stomach Smooth Muscle	stomach
37	chr14:80113400-80114400	Weak transcription	Colon Smooth Muscle	Colon
38	chr14:80115000-80115200	Enhancers	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links