Variant report

Variant	rs8021855
Chromosome Location	chr14:80106220-80106221
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10147137	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12100748	0.89[AFR][1000 genomes]
rs28407338	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs57934289	0.94[AFR][1000 genomes]
rs60570231	0.80[AFR][1000 genomes]
rs6574516	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7143533	0.90[AMR][1000 genomes]
rs7147112	0.90[AMR][1000 genomes]
rs7160930	0.83[AMR][1000 genomes]
rs73327956	0.90[AMR][1000 genomes]
rs73329935	0.91[AMR][1000 genomes]
rs9652380	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:43 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv869542	chr14:80009619-80118315	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1834615	chr14:80098883-80114863	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1838840	chr14:80098883-80114863	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv511536	chr14:80098883-80115560	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv3359313	chr14:80101248-80115879	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
8	nsv1370	chr14:80103510-80121890	Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
9	nsv565248	chr14:80104576-80110909	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
10	nsv565249	chr14:80104576-80114558	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
11	nsv565250	chr14:80104576-80114863	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
12	esv3531023	chr14:80104699-80109297	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
13	esv990270	chr14:80105013-80115340	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
14	esv3515654	chr14:80105199-80116147	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
15	esv3515649	chr14:80105549-80116047	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
16	nsv820296	chr14:80105679-80115419	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
17	esv3530291	chr14:80105821-80115300	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
18	esv1802815	chr14:80105979-80114469	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
19	esv1815863	chr14:80105979-80114469	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
20	esv1831443	chr14:80105979-80114469	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
21	esv3531026	chr14:80105999-80109297	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
22	esv3531025	chr14:80105999-80110497	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
23	esv3515657	chr14:80106078-80115365	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
24	esv1792559	chr14:80106132-80114669	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
25	esv1799895	chr14:80106132-80114669	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
26	esv1805116	chr14:80106132-80114669	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
27	esv1808779	chr14:80106132-80114669	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
28	esv1815397	chr14:80106132-80114669	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
29	esv1821052	chr14:80106132-80114669	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
30	esv1827093	chr14:80106132-80114669	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
31	esv1832900	chr14:80106132-80114669	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
32	esv1842849	chr14:80106132-80114669	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
33	esv1851659	chr14:80106132-80114669	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
34	nsv514754	chr14:80106135-80114527	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
35	nsv512366	chr14:80106136-80115439	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
36	esv3530293	chr14:80106154-80115158	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
37	nsv827004	chr14:80106159-80115086	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
38	esv3515658	chr14:80106189-80115166	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
39	esv3515653	chr14:80106194-80115146	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
40	esv3530288	chr14:80106203-80115125	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
41	esv3515656	chr14:80106204-80115088	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
42	esv3530289	chr14:80106210-80115123	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
43	nsv820615	chr14:80106214-80115086	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80105000-80106400	Enhancers	Duodenum Smooth Muscle	Duodenum
2	chr14:80105000-80108600	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr14:80106000-80106600	Enhancers	Stomach Smooth Muscle	stomach
4	chr14:80106000-80108000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr14:80106000-80109400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr14:80106200-80106400	Enhancers	Pancreas	Pancrea
7	chr14:80106200-80109200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links