Variant report

Variant	esv3519034
Chromosome Location	chr6:165723412-165733360
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:183)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr6:165733281-165733292	K562	blood:	n/a	n/a
2	MXI1	chr6:165722399-165723472	SK-N-SH	brain:	n/a	chr6:165723107-165723122 chr6:165723109-165723124
3	REST	chr6:165730351-165730533	H1-hESC	embryonic stem cell:	n/a	chr6:165730431-165730441 chr6:165730435-165730444
4	REST	chr6:165730334-165730521	H1-hESC	embryonic stem cell:	n/a	chr6:165730431-165730441 chr6:165730435-165730444
5	STAT3	chr6:165723521-165723608	MCF10A-Er-Src	breast:	n/a	n/a

(count:183 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:165723708-165723758	A549	lung:	n/a
2	chr6:165723708-165723758	HCT-116	colon:	n/a
3	chr6:165723796-165723846	HRE	kidney:	n/a
4	chr6:165723796-165723846	RPTEC	kidney:	n/a
5	chr6:165724355-165724405	LNCaP	prostate:	n/a
6	chr6:165723796-165723846	K562	blood:	n/a
7	chr6:165723708-165723758	BJ	skin:	n/a
8	chr6:165723708-165723758	AG04450	lung:	fetal
9	chr6:165723708-165723758	AG09319	gingival:	n/a
10	chr6:165724355-165724405	SKMC	muscle:	n/a
11	chr6:165723796-165723846	CMK	blood:	n/a
12	chr6:165723708-165723758	GM19239	blood:	n/a
13	chr6:165723796-165723846	GM12892	blood:	n/a
14	chr6:165723708-165723758	PFSK-1	brain:	n/a
15	chr6:165723796-165723846	Caco-2	colon:	n/a
16	chr6:165724355-165724405	MCF-7	breast:	n/a
17	chr6:165723708-165723758	HRE	kidney:	n/a
18	chr6:165723708-165723758	HCF	heart:	n/a
19	chr6:165723796-165723846	HNPCEpiC	eye:	n/a
20	chr6:165723708-165723758	NH-A	brain:	n/a
21	chr6:165723796-165723846	NHDF-neo	bronchial:	n/a
22	chr6:165723708-165723758	AoSMC	blood vessel:	n/a
23	chr6:165723796-165723846	A549	lung:	n/a
24	chr6:165723796-165723846	IMR90	lung:	fetal
25	chr6:165723708-165723758	SK-N-MC	brain:	n/a
26	chr6:165723708-165723758	GM12878	blood:	n/a
27	chr6:165724355-165724405	K562	blood:	n/a
28	chr6:165723708-165723758	HEEpiC	esophagus:	n/a
29	chr6:165724355-165724405	BJ	skin:	n/a
30	chr6:165723796-165723846	T-47D	breast:	n/a
31	chr6:165723796-165723846	AG09309	skin:	n/a
32	chr6:165723796-165723846	H1-hESC	embryonic stem cell:	embryo
33	chr6:165723708-165723758	NHBE	bronchial:	n/a
34	chr6:165724355-165724405	GM12878	blood:	n/a
35	chr6:165724355-165724405	NT2-D1	testis:	n/a
36	chr6:165723708-165723758	LNCaP	prostate:	n/a
37	chr6:165724355-165724405	GM06990	blood:	n/a
38	chr6:165723796-165723846	HPAEpiC	pulmonary alveolar:	n/a
39	chr6:165724355-165724405	HAEpiC	amniotic membrane:	n/a
40	chr6:165723708-165723758	MCF10A-Er-Src	breast:	n/a
41	chr6:165723796-165723846	HCPEpiC	choroid plexus:	n/a
42	chr6:165723708-165723758	Hela-S3	cervix:	n/a
43	chr6:165723708-165723758	ProgFib	skin:	n/a
44	chr6:165723708-165723758	HRPEpiC	eye:	n/a
45	chr6:165723708-165723758	GM12891	blood:	n/a
46	chr6:165723708-165723758	GM06990	blood:	n/a
47	chr6:165723708-165723758	IMR90	lung:	fetal
48	chr6:165724355-165724405	HCF	heart:	n/a
49	chr6:165723796-165723846	SK-N-SH	brain:	n/a
50	chr6:165724355-165724405	HRCEpiC	kidney:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:165726694..165728455-chr6:165728585..165730141,2	MCF-7	breast:
2	chr6:165726694..165728455-chr6:165728585..165730141,2	MCF-7	breast:

No data

Variant related genes	Relation type
C6orf118	TF binding region
C6orf118	CpG island

Extended variants
information (count: 263 )
Associated
traits (count: 83 )

Variant overlapped rSNPs/rCNVs (count:263 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs147851069	chr6:165723442-165723443	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs578066	chr6:165723449-165723450	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs368223684	chr6:165723472-165723473	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs621122	chr6:165723485-165723486	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs182478454	chr6:165723508-165723509	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
6	rs185742396	chr6:165723517-165723518	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs573635427	chr6:165723532-165723533	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs140291254	chr6:165723537-165723538	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs537677585	chr6:165723556-165723557	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
10	rs386708347	chr6:165723559-165723560	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
11	rs508897	chr6:165723568-165723569	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs573795856	chr6:165723653-165723654	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs508041	chr6:165723655-165723656	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs374075131	chr6:165723707-165723708	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs201581876	chr6:165723717-165723718	Enhancers Weak transcription	CpG island	1 gene(s)	Overlapped CNVs	n/a
16	rs76782633	chr6:165723719-165723720	Enhancers Weak transcription	CpG island	1 gene(s)	Overlapped CNVs	n/a
17	rs397886038	chr6:165723720-165723721	Enhancers Weak transcription	CpG island	1 gene(s)	Overlapped CNVs	n/a
18	rs556325981	chr6:165723761-165723762	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs7761386	chr6:165723762-165723763	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs376464736	chr6:165723769-165723770	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs369972666	chr6:165723839-165723840	Enhancers Weak transcription	CpG island	1 gene(s)	Overlapped CNVs	n/a
22	rs201046377	chr6:165723894-165723895	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs386708348	chr6:165723895-165723896	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs201844147	chr6:165723896-165723897	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs199999519	chr6:165723897-165723898	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs563929724	chr6:165723925-165723926	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs189081458	chr6:165723934-165723935	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs181123749	chr6:165723971-165723972	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs539838012	chr6:165724011-165724012	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs558067528	chr6:165724039-165724040	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs528974699	chr6:165724040-165724041	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs504371	chr6:165724052-165724053	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs504349	chr6:165724060-165724061	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs185664653	chr6:165724064-165724065	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs112774052	chr6:165724111-165724112	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs551602492	chr6:165724117-165724118	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs566759243	chr6:165724151-165724152	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs617910	chr6:165724152-165724153	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs149941574	chr6:165724222-165724223	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs76785996	chr6:165724238-165724239	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs191450789	chr6:165724270-165724271	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs577468041	chr6:165724295-165724296	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs144938119	chr6:165724298-165724299	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs386708349	chr6:165724325-165724326	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs182348575	chr6:165724326-165724327	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs501712	chr6:165724332-165724333	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs554490972	chr6:165724362-165724363	Enhancers Weak transcription	CpG island	1 gene(s)	Overlapped CNVs	n/a
48	rs572647274	chr6:165724388-165724389	Enhancers Weak transcription	CpG island	1 gene(s)	Overlapped CNVs	n/a
49	rs555124698	chr6:165724402-165724403	Weak transcription	CpG island	1 gene(s)	Overlapped CNVs	n/a
50	rs149065999	chr6:165724505-165724506	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:83)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
Chordoma	18071362	CNVD
Glioblastoma multiforme	19435819	CNVD
Ovarian cancer	21720365	CNVD
Glioblastoma multiforme	21138945	CNVD
abnormal development	18461090	CNVD
Epilepsy	22083797	CNVD
Myelofibrosis	22110671	CNVD
chordoma	19801981	CNVD
Myxofibrosarcoma	16751306	CNVD
Autism	17483303	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Acute myeloid leukemia	19651601	CNVD
Sudden cardiac death	19188705	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	22522925	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165722800-165723600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:165723000-165724400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:165723200-165723600	Enhancers	Fetal Lung	lung
4	chr6:165723200-165723600	Enhancers	Stomach Smooth Muscle	stomach
5	chr6:165723200-165723800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:165723200-165723800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr6:165723200-165723800	Enhancers	Rectal Smooth Muscle	rectum
8	chr6:165723200-165726000	Weak transcription	Right Atrium	heart
9	chr6:165723200-165733800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:165723400-165723600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:165723400-165723600	Enhancers	Brain Germinal Matrix	brain
12	chr6:165723400-165723800	Enhancers	Brain Cingulate Gyrus	brain
13	chr6:165723400-165723800	Enhancers	Brain Hippocampus Middle	brain
14	chr6:165723400-165724000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr6:165723400-165724000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:165723600-165723800	Enhancers	Fetal Stomach	stomach
17	chr6:165723600-165724000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:165723600-165724000	Enhancers	Fetal Brain Female	brain
19	chr6:165724000-165724200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:165724000-165725000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:165730000-165730600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:165730400-165731200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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