Variant report

Variant	rs555124698
Chromosome Location	chr6:165724402-165724403
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:165724355-165724405	BJ	skin:	n/a
2	chr6:165724355-165724405	HCT-116	colon:	n/a
3	chr6:165724355-165724405	HMEC	breast:	n/a
4	chr6:165724355-165724405	K562	blood:	n/a
5	chr6:165724355-165724405	HAEpiC	amniotic membrane:	n/a
6	chr6:165724355-165724405	LNCaP	prostate:	n/a
7	chr6:165724355-165724405	HEK293	kidney:	embryo
8	chr6:165724355-165724405	HCPEpiC	choroid plexus:	n/a
9	chr6:165724355-165724405	Hela-S3	cervix:	n/a
10	chr6:165724355-165724405	SAEC	small airway:	n/a
11	chr6:165724355-165724405	U87	brain:	n/a
12	chr6:165724355-165724405	HCF	heart:	n/a
13	chr6:165724355-165724405	NB4	blood:	n/a
14	chr6:165724355-165724405	ECC-1	luminal epithelium:	n/a
15	chr6:165724355-165724405	PANC-1	pancreas:	n/a
16	chr6:165724355-165724405	AG04450	lung:	fetal
17	chr6:165724355-165724405	MCF10A-Er-Src	breast:	n/a
18	chr6:165724355-165724405	ovcar-3	ovarian:	n/a
19	chr6:165724355-165724405	ProgFib	skin:	n/a
20	chr6:165724355-165724405	RPTEC	kidney:	n/a
21	chr6:165724355-165724405	HIPEpiC	eye:	n/a
22	chr6:165724355-165724405	GM06990	blood:	n/a
23	chr6:165724355-165724405	HRE	kidney:	n/a
24	chr6:165724355-165724405	HepG2	liver:	n/a
25	chr6:165724355-165724405	IMR90	lung:	fetal
26	chr6:165724355-165724405	NHBE	bronchial:	n/a
27	chr6:165724355-165724405	BE2_C	brain:	n/a
28	chr6:165724355-165724405	SK-N-SH_RA	brain:	n/a
29	chr6:165724355-165724405	HCM	heart:	n/a
30	chr6:165724355-165724405	CMK	blood:	n/a
31	chr6:165724355-165724405	SK-N-SH	brain:	n/a
32	chr6:165724355-165724405	GM12891	blood:	n/a
33	chr6:165724355-165724405	HRPEpiC	eye:	n/a
34	chr6:165724355-165724405	HPAEpiC	pulmonary alveolar:	n/a
35	chr6:165724355-165724405	AG09309	skin:	n/a
36	chr6:165724355-165724405	AG09319	gingival:	n/a
37	chr6:165724355-165724405	NT2-D1	testis:	n/a
38	chr6:165724355-165724405	HEEpiC	esophagus:	n/a
39	chr6:165724355-165724405	HRCEpiC	kidney:	n/a
40	chr6:165724355-165724405	AG04449	skin:	fetal
41	chr6:165724355-165724405	Caco-2	colon:	n/a
42	chr6:165724355-165724405	T-47D	breast:	n/a
43	chr6:165724355-165724405	PFSK-1	brain:	n/a
44	chr6:165724355-165724405	A549	lung:	n/a
45	chr6:165724355-165724405	NH-A	brain:	n/a
46	chr6:165724355-165724405	Hepatocyte	liver:	n/a
47	chr6:165724355-165724405	MCF-7	breast:	n/a
48	chr6:165724355-165724405	AG10803	skin:	n/a
49	chr6:165724355-165724405	GM12878	blood:	n/a
50	chr6:165724355-165724405	GM12892	blood:	n/a

No data

Variant related genes	Relation type
C6orf118	CpG island

Extended variants
information (count: 27 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432982	chr6:165528589-165835589	Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv605245	chr6:165542686-165845903	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv1031648	chr6:165544569-165841029	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv432983	chr6:165554403-165851585	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	esv3417270	chr6:165682773-166023032	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv5586	chr6:165694448-165747217	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv508438	chr6:165703355-165760649	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv3499772	chr6:165715090-165732713	Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3499773	chr6:165715090-165732713	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv1812650	chr6:165716093-165737153	Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3493315	chr6:165721412-165733110	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3493316	chr6:165721412-165733110	Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv886928	chr6:165722345-166197889	Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
14	esv3471965	chr6:165722662-165733960	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv1805588	chr6:165722947-165731848	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	esv3519034	chr6:165723412-165733360	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	esv3471964	chr6:165723487-165733335	Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	esv1806730	chr6:165723568-165731496	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	esv1814010	chr6:165723568-165731496	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	esv2597748	chr6:165723804-165732650	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	esv3519035	chr6:165723812-165733160	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
22	esv3519039	chr6:165723947-165733042	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	esv1802444	chr6:165724052-165731496	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
24	esv1802555	chr6:165724052-165731496	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
25	esv2547126	chr6:165724146-165732932	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
26	esv3519040	chr6:165724319-165732567	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
27	nsv511925	chr6:165724364-165732663	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165723200-165726000	Weak transcription	Right Atrium	heart
2	chr6:165723200-165733800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:165724000-165725000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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