Variant report

Variant	esv3471965
Chromosome Location	chr6:165722662-165733960
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:46)
CpG islands
(count:367)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:46 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CHD2	chr6:165722861-165723245	H1-hESC	embryonic stem cell:	n/a	n/a
2	CHD2	chr6:165722731-165723055	Hela-S3	cervix:	n/a	n/a
3	CTCF	chr6:165722820-165722970	HCPEpiC	choroid plexus:	n/a	n/a
4	E2F6	chr6:165722203-165723274	H1-hESC	embryonic stem cell:	n/a	chr6:165722645-165722660
5	E2F6	chr6:165722358-165722715	A549	lung:	n/a	chr6:165722645-165722660
6	E2F6	chr6:165722059-165723307	H1-hESC	embryonic stem cell:	n/a	chr6:165722645-165722660
7	ELK1	chr6:165722938-165722976	Hela-S3	cervix:	n/a	n/a
8	HA-E2F1	chr6:165722465-165723210	MCF-7	breast:	n/a	chr6:165722645-165722660
9	JUN	chr6:165723053-165723253	H1-hESC	embryonic stem cell:	n/a	n/a
10	JUND	chr6:165733281-165733292	K562	blood:	n/a	n/a
11	JUND	chr6:165722959-165723157	H1-hESC	embryonic stem cell:	n/a	n/a
12	JUND	chr6:165722982-165723148	H1-hESC	embryonic stem cell:	n/a	n/a
13	KAP1	chr6:165722694-165723255	U2OS	brain:	n/a	n/a
14	KAP1	chr6:165722299-165723318	HEK293	kidney:	n/a	n/a
15	MAX	chr6:165722322-165723199	H1-hESC	embryonic stem cell:	n/a	n/a
16	MAX	chr6:165722452-165723119	Hela-S3	cervix:	n/a	n/a
17	MAX	chr6:165722210-165723123	A549	lung:	n/a	n/a
18	MAX	chr6:165722256-165723257	H1-hESC	embryonic stem cell:	n/a	n/a
19	MAX	chr6:165722235-165723305	H1-hESC	embryonic stem cell:	n/a	n/a
20	MAX	chr6:165722597-165723090	A549	lung:	n/a	n/a
21	MAZ	chr6:165722769-165722825	Hela-S3	cervix:	n/a	n/a
22	MAZ	chr6:165722656-165723287	IMR90	lung:	n/a	n/a
23	MXI1	chr6:165722399-165723472	SK-N-SH	brain:	n/a	chr6:165723107-165723122 chr6:165723109-165723124
24	MXI1	chr6:165722586-165723269	H1-hESC	embryonic stem cell:	n/a	chr6:165723107-165723122 chr6:165723109-165723124
25	MXI1	chr6:165722600-165722785	Hela-S3	cervix:	n/a	n/a
26	MXI1	chr6:165722535-165723262	IMR90	lung:	n/a	chr6:165723107-165723122 chr6:165723109-165723124
27	MXI1	chr6:165723072-165723238	Hela-S3	cervix:	n/a	chr6:165723107-165723122 chr6:165723109-165723124
28	MYC	chr6:165722714-165722893	MCF-7	breast:	n/a	n/a
29	POLR2A	chr6:165722616-165723253	H1-neurons	neurons:	n/a	n/a
30	POLR2A	chr6:165722942-165723162	H1-hESC	embryonic stem cell:	n/a	n/a
31	POLR2A	chr6:165722619-165723296	H1-neurons	neurons:	n/a	n/a
32	REST	chr6:165730334-165730521	H1-hESC	embryonic stem cell:	n/a	chr6:165730431-165730441 chr6:165730435-165730444
33	REST	chr6:165730351-165730533	H1-hESC	embryonic stem cell:	n/a	chr6:165730431-165730441 chr6:165730435-165730444
34	SIN3A	chr6:165722471-165723351	H1-hESC	embryonic stem cell:	n/a	chr6:165723168-165723181
35	SIN3AK20	chr6:165722748-165723232	PFSK-1	brain:	n/a	n/a
36	SIN3AK20	chr6:165722964-165723285	H1-hESC	embryonic stem cell:	n/a	n/a
37	SIN3AK20	chr6:165722835-165723333	H1-hESC	embryonic stem cell:	n/a	n/a
38	SIN3AK20	chr6:165722871-165723214	PFSK-1	brain:	n/a	n/a
39	SP1	chr6:165722791-165723291	H1-hESC	embryonic stem cell:	n/a	chr6:165722817-165722827
40	STAT3	chr6:165723521-165723608	MCF10A-Er-Src	breast:	n/a	n/a
41	TEAD4	chr6:165722860-165723219	H1-hESC	embryonic stem cell:	n/a	n/a
42	TEAD4	chr6:165722906-165723294	H1-hESC	embryonic stem cell:	n/a	n/a
43	YY1	chr6:165722731-165723222	H1-hESC	embryonic stem cell:	n/a	n/a
44	YY1	chr6:165722887-165723220	H1-hESC	embryonic stem cell:	n/a	n/a
45	ZNF143	chr6:165722814-165723314	H1-hESC	embryonic stem cell:	n/a	chr6:165723215-165723234
46	ZNF263	chr6:165722354-165723251	HEK293-T-REx	kidney:	n/a	chr6:165722738-165722747 chr6:165722733-165722754 chr6:165722735-165722744 chr6:165722744-165722753 chr6:165722741-165722750 chr6:165723202-165723211

(count:367 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:165722858-165722908	GM06990	blood:	n/a
2	chr6:165722858-165722908	GM06990	blood:	n/a
3	chr6:165722651-165722701	AG04449	skin:	fetal
4	chr6:165723708-165723758	HEEpiC	esophagus:	n/a
5	chr6:165723796-165723846	AG09309	skin:	n/a
6	chr6:165723034-165723084	U87	brain:	n/a
7	chr6:165723796-165723846	SK-N-MC	brain:	n/a
8	chr6:165722858-165722908	BJ	skin:	n/a
9	chr6:165724355-165724405	U87	brain:	n/a
10	chr6:165724355-165724405	CMK	blood:	n/a
11	chr6:165723034-165723084	LNCaP	prostate:	n/a
12	chr6:165723034-165723084	HEK293	kidney:	embryo
13	chr6:165724355-165724405	HepG2	liver:	n/a
14	chr6:165723034-165723084	HIPEpiC	eye:	n/a
15	chr6:165723796-165723846	T-47D	breast:	n/a
16	chr6:165724355-165724405	AoSMC	blood vessel:	n/a
17	chr6:165723034-165723084	HAEpiC	amniotic membrane:	n/a
18	chr6:165722651-165722701	Hepatocyte	liver:	n/a
19	chr6:165722858-165722908	GM12892	blood:	n/a
20	chr6:165722858-165722908	Hela-S3	cervix:	n/a
21	chr6:165723796-165723846	HCPEpiC	choroid plexus:	n/a
22	chr6:165723796-165723846	GM12892	blood:	n/a
23	chr6:165722858-165722908	AG10803	skin:	n/a
24	chr6:165722858-165722908	HUVEC	blood vessel:	n/a
25	chr6:165723034-165723084	AG09309	skin:	n/a
26	chr6:165724355-165724405	HCPEpiC	choroid plexus:	n/a
27	chr6:165722858-165722908	SK-N-SH	brain:	n/a
28	chr6:165722858-165722908	HIPEpiC	eye:	n/a
29	chr6:165724355-165724405	NH-A	brain:	n/a
30	chr6:165723796-165723846	HNPCEpiC	eye:	n/a
31	chr6:165724355-165724405	A549	lung:	n/a
32	chr6:165723034-165723084	HRCEpiC	kidney:	n/a
33	chr6:165723034-165723084	GM19239	blood:	n/a
34	chr6:165723034-165723084	RPTEC	kidney:	n/a
35	chr6:165723796-165723846	BJ	skin:	n/a
36	chr6:165723796-165723846	MCF10A-Er-Src	breast:	n/a
37	chr6:165723796-165723846	GM12878	blood:	n/a
38	chr6:165723708-165723758	GM06990	blood:	n/a
39	chr6:165722858-165722908	HL-60	blood:	n/a
40	chr6:165723708-165723758	IMR90	lung:	fetal
41	chr6:165724355-165724405	BJ	skin:	n/a
42	chr6:165724355-165724405	NHDF-neo	bronchial:	n/a
43	chr6:165723796-165723846	MCF-7	breast:	n/a
44	chr6:165722858-165722908	PFSK-1	brain:	n/a
45	chr6:165723708-165723758	GM12891	blood:	n/a
46	chr6:165722858-165722908	AG04449	skin:	fetal
47	chr6:165723708-165723758	PrEC	prostate:	n/a
48	chr6:165723708-165723758	Hela-S3	cervix:	n/a
49	chr6:165723708-165723758	SK-N-SH	brain:	n/a
50	chr6:165722651-165722701	SKMC	muscle:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:165726694..165728455-chr6:165728585..165730141,2	MCF-7	breast:
2	chr6:165726694..165728455-chr6:165728585..165730141,2	MCF-7	breast:

No data

Variant related genes	Relation type
C6orf118	TF binding region
C6orf118	CpG island

Extended variants
information (count: 319 )
Associated
traits (count: 83 )

Variant overlapped rSNPs/rCNVs (count:319 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs562290969	chr6:165722680-165722681	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription	TF binding region CpG island	1 gene(s)	Overlapped CNVs	n/a
2	rs377546919	chr6:165722735-165722736	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs529556680	chr6:165722764-165722765	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs377085936	chr6:165722773-165722774	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs562957721	chr6:165722779-165722780	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs530467305	chr6:165722789-165722790	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs112324018	chr6:165722790-165722791	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs62442133	chr6:165722802-165722803	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs192479037	chr6:165722810-165722811	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
10	rs550843	chr6:165722832-165722833	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
11	rs546493745	chr6:165722833-165722834	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
12	rs568234769	chr6:165722842-165722843	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
13	rs374603171	chr6:165722843-165722844	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
14	rs557252901	chr6:165722892-165722893	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island	1 gene(s)	Overlapped CNVs	n/a
15	rs569164312	chr6:165722900-165722901	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island	1 gene(s)	Overlapped CNVs	n/a
16	rs539887408	chr6:165722944-165722945	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
17	rs9459360	chr6:165722945-165722946	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
18	rs573288481	chr6:165722975-165722976	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
19	rs184518240	chr6:165722998-165722999	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
20	rs371642796	chr6:165723036-165723037	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island	1 gene(s)	Overlapped CNVs	n/a
21	rs200159427	chr6:165723063-165723064	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island	1 gene(s)	Overlapped CNVs	n/a
22	rs147652862	chr6:165723066-165723067	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island	1 gene(s)	Overlapped CNVs	n/a
23	rs200439062	chr6:165723096-165723097	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region	1 gene(s)	Overlapped CNVs	n/a
24	rs373359871	chr6:165723103-165723104	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region	1 gene(s)	Overlapped CNVs	n/a
25	rs547779815	chr6:165723130-165723131	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region	1 gene(s)	Overlapped CNVs	n/a
26	rs377157909	chr6:165723133-165723134	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region	1 gene(s)	Overlapped CNVs	n/a
27	rs566091294	chr6:165723155-165723156	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region	1 gene(s)	Overlapped CNVs	n/a
28	rs575424	chr6:165723166-165723167	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
29	rs555168433	chr6:165723210-165723211	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
30	rs564077372	chr6:165723241-165723242	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
31	rs542358743	chr6:165723263-165723264	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
32	rs71688984	chr6:165723264-165723265	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
33	rs528197917	chr6:165723292-165723293	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
34	rs546628813	chr6:165723345-165723346	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
35	rs190203579	chr6:165723352-165723353	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
36	rs529142271	chr6:165723360-165723361	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
37	rs147851069	chr6:165723442-165723443	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
38	rs578066	chr6:165723449-165723450	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs368223684	chr6:165723472-165723473	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
40	rs621122	chr6:165723485-165723486	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs182478454	chr6:165723508-165723509	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs185742396	chr6:165723517-165723518	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs573635427	chr6:165723532-165723533	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
44	rs140291254	chr6:165723537-165723538	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
45	rs537677585	chr6:165723556-165723557	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
46	rs386708347	chr6:165723559-165723560	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
47	rs508897	chr6:165723568-165723569	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs573795856	chr6:165723653-165723654	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs508041	chr6:165723655-165723656	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs374075131	chr6:165723707-165723708	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:83)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
Chordoma	18071362	CNVD
Glioblastoma multiforme	19435819	CNVD
Ovarian cancer	21720365	CNVD
Glioblastoma multiforme	21138945	CNVD
abnormal development	18461090	CNVD
Epilepsy	22083797	CNVD
Myelofibrosis	22110671	CNVD
chordoma	19801981	CNVD
Myxofibrosarcoma	16751306	CNVD
Autism	17483303	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Acute myeloid leukemia	19651601	CNVD
Sudden cardiac death	19188705	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	22522925	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:164 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165721400-165723200	Active TSS	Brain Anterior Caudate	brain
2	chr6:165721600-165722800	Weak transcription	Gastric	stomach
3	chr6:165722200-165722800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
4	chr6:165722200-165723200	Active TSS	Brain Hippocampus Middle	brain
5	chr6:165722200-165723200	Active TSS	Fetal Lung	lung
6	chr6:165722200-165723200	Active TSS	HSMM	muscle
7	chr6:165722400-165722800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
8	chr6:165722400-165722800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:165722400-165722800	Flanking Active TSS	Primary hematopoietic stem cells	blood
10	chr6:165722400-165722800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:165722400-165722800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
12	chr6:165722400-165722800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:165722400-165722800	Flanking Active TSS	Duodenum Mucosa	Duodenum
14	chr6:165722400-165722800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
15	chr6:165722400-165722800	Flanking Active TSS	Fetal Muscle Leg	muscle
16	chr6:165722400-165722800	Flanking Active TSS	Right Ventricle	heart
17	chr6:165722400-165722800	Flanking Active TSS	Hela-S3	cervix
18	chr6:165722400-165723000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr6:165722400-165723000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:165722400-165723000	Active TSS	Brain Angular Gyrus	brain
21	chr6:165722400-165723000	Active TSS	Brain Inferior Temporal Lobe	brain
22	chr6:165722400-165723000	Flanking Active TSS	Fetal Brain Male	brain
23	chr6:165722400-165723000	Active TSS	Ovary	ovary
24	chr6:165722400-165723000	Active TSS	Rectal Smooth Muscle	rectum
25	chr6:165722400-165723000	Active TSS	NH-A	brain
26	chr6:165722400-165723200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
27	chr6:165722400-165723200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:165722400-165723200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
29	chr6:165722400-165723200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
30	chr6:165722400-165723200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
31	chr6:165722400-165723200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr6:165722400-165723200	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr6:165722400-165723200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:165722400-165723200	Flanking Active TSS	Adipose Nuclei	Adipose
35	chr6:165722400-165723200	Bivalent Enhancer	Liver	Liver
36	chr6:165722400-165723200	Active TSS	Brain Cingulate Gyrus	brain
37	chr6:165722400-165723200	Active TSS	Brain Substantia Nigra	brain
38	chr6:165722400-165723200	Active TSS	Duodenum Smooth Muscle	Duodenum
39	chr6:165722400-165723200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
40	chr6:165722400-165723200	Active TSS	Fetal Intestine Small	intestine
41	chr6:165722400-165723200	Active TSS	Pancreatic Islets	Pancreatic Islet
42	chr6:165722400-165723200	Active TSS	Psoas Muscle	Psoas
43	chr6:165722400-165723200	Active TSS	Rectal Mucosa Donor 29	rectum
44	chr6:165722400-165723200	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
45	chr6:165722400-165723200	Active TSS	Stomach Smooth Muscle	stomach
46	chr6:165722400-165723200	Enhancers	Spleen	Spleen
47	chr6:165722400-165723200	Active TSS	HSMMtube	muscle
48	chr6:165722400-165723200	Active TSS	Osteobl	bone
49	chr6:165722400-165723400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr6:165722400-165723400	Active TSS	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links