Variant report

Variant	rs566091294
Chromosome Location	chr6:165723155-165723156
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr6:165722887-165723220	H1-hESC	embryonic stem cell:	n/a	n/a
2	SP1	chr6:165722791-165723291	H1-hESC	embryonic stem cell:	n/a	chr6:165722817-165722827
3	TEAD4	chr6:165722906-165723294	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr6:165722616-165723253	H1-neurons	neurons:	n/a	n/a
5	MAX	chr6:165722256-165723257	H1-hESC	embryonic stem cell:	n/a	n/a
6	SIN3A	chr6:165722471-165723351	H1-hESC	embryonic stem cell:	n/a	chr6:165723168-165723181
7	SIN3AK20	chr6:165722871-165723214	PFSK-1	brain:	n/a	n/a
8	MAX	chr6:165722235-165723305	H1-hESC	embryonic stem cell:	n/a	n/a
9	MXI1	chr6:165722535-165723262	IMR90	lung:	n/a	chr6:165723107-165723122 chr6:165723109-165723124
10	KAP1	chr6:165722694-165723255	U2OS	brain:	n/a	n/a
11	SIN3AK20	chr6:165722835-165723333	H1-hESC	embryonic stem cell:	n/a	n/a
12	JUND	chr6:165722959-165723157	H1-hESC	embryonic stem cell:	n/a	n/a
13	MXI1	chr6:165722586-165723269	H1-hESC	embryonic stem cell:	n/a	chr6:165723107-165723122 chr6:165723109-165723124
14	MAZ	chr6:165722656-165723287	IMR90	lung:	n/a	n/a
15	MXI1	chr6:165723072-165723238	Hela-S3	cervix:	n/a	chr6:165723107-165723122 chr6:165723109-165723124
16	MXI1	chr6:165722399-165723472	SK-N-SH	brain:	n/a	chr6:165723107-165723122 chr6:165723109-165723124
17	HA-E2F1	chr6:165722465-165723210	MCF-7	breast:	n/a	chr6:165722645-165722660
18	KAP1	chr6:165722299-165723318	HEK293	kidney:	n/a	n/a
19	JUN	chr6:165723053-165723253	H1-hESC	embryonic stem cell:	n/a	n/a
20	CHD2	chr6:165722861-165723245	H1-hESC	embryonic stem cell:	n/a	n/a
21	SIN3AK20	chr6:165722748-165723232	PFSK-1	brain:	n/a	n/a
22	POLR2A	chr6:165722619-165723296	H1-neurons	neurons:	n/a	n/a
23	ZNF143	chr6:165722814-165723314	H1-hESC	embryonic stem cell:	n/a	chr6:165723215-165723234
24	SIN3AK20	chr6:165722964-165723285	H1-hESC	embryonic stem cell:	n/a	n/a
25	TEAD4	chr6:165722860-165723219	H1-hESC	embryonic stem cell:	n/a	n/a
26	E2F6	chr6:165722203-165723274	H1-hESC	embryonic stem cell:	n/a	chr6:165722645-165722660
27	E2F6	chr6:165722059-165723307	H1-hESC	embryonic stem cell:	n/a	chr6:165722645-165722660
28	ZNF263	chr6:165722354-165723251	HEK293-T-REx	kidney:	n/a	chr6:165722738-165722747 chr6:165722733-165722754 chr6:165722735-165722744 chr6:165722744-165722753 chr6:165722741-165722750 chr6:165723202-165723211
29	MAX	chr6:165722322-165723199	H1-hESC	embryonic stem cell:	n/a	n/a
30	YY1	chr6:165722731-165723222	H1-hESC	embryonic stem cell:	n/a	n/a
31	POLR2A	chr6:165722942-165723162	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
C6orf118	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432982	chr6:165528589-165835589	Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv605245	chr6:165542686-165845903	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv1031648	chr6:165544569-165841029	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv432983	chr6:165554403-165851585	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	esv3417270	chr6:165682773-166023032	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv5586	chr6:165694448-165747217	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv508438	chr6:165703355-165760649	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv3499772	chr6:165715090-165732713	Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3499773	chr6:165715090-165732713	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv1812650	chr6:165716093-165737153	Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3493315	chr6:165721412-165733110	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3493316	chr6:165721412-165733110	Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv886928	chr6:165722345-166197889	Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
14	esv3471965	chr6:165722662-165733960	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv1805588	chr6:165722947-165731848	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165721400-165723200	Active TSS	Brain Anterior Caudate	brain
2	chr6:165722200-165723200	Active TSS	Brain Hippocampus Middle	brain
3	chr6:165722200-165723200	Active TSS	Fetal Lung	lung
4	chr6:165722200-165723200	Active TSS	HSMM	muscle
5	chr6:165722400-165723200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
6	chr6:165722400-165723200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:165722400-165723200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
8	chr6:165722400-165723200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
9	chr6:165722400-165723200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
10	chr6:165722400-165723200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:165722400-165723200	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr6:165722400-165723200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:165722400-165723200	Flanking Active TSS	Adipose Nuclei	Adipose
14	chr6:165722400-165723200	Bivalent Enhancer	Liver	Liver
15	chr6:165722400-165723200	Active TSS	Brain Cingulate Gyrus	brain
16	chr6:165722400-165723200	Active TSS	Brain Substantia Nigra	brain
17	chr6:165722400-165723200	Active TSS	Duodenum Smooth Muscle	Duodenum
18	chr6:165722400-165723200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
19	chr6:165722400-165723200	Active TSS	Fetal Intestine Small	intestine
20	chr6:165722400-165723200	Active TSS	Pancreatic Islets	Pancreatic Islet
21	chr6:165722400-165723200	Active TSS	Psoas Muscle	Psoas
22	chr6:165722400-165723200	Active TSS	Rectal Mucosa Donor 29	rectum
23	chr6:165722400-165723200	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
24	chr6:165722400-165723200	Active TSS	Stomach Smooth Muscle	stomach
25	chr6:165722400-165723200	Enhancers	Spleen	Spleen
26	chr6:165722400-165723200	Active TSS	HSMMtube	muscle
27	chr6:165722400-165723200	Active TSS	Osteobl	bone
28	chr6:165722400-165723400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:165722400-165723400	Active TSS	Brain Germinal Matrix	brain
30	chr6:165722600-165723200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:165722600-165723200	Active TSS	H9 Cell Line	embryonic stem cell
32	chr6:165722600-165723200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:165722600-165723200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
34	chr6:165722600-165723200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
35	chr6:165722600-165723200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
36	chr6:165722600-165723200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:165722600-165723200	Active TSS	Breast Myoepithelial Primary Cells	Breast
38	chr6:165722600-165723200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr6:165722600-165723200	Active TSS	Colon Smooth Muscle	Colon
40	chr6:165722600-165723200	Active TSS	Fetal Intestine Large	intestine
41	chr6:165722600-165723200	Active TSS	Placenta Amnion	Placenta Amnion
42	chr6:165722600-165723200	Active TSS	Rectal Mucosa Donor 31	rectum
43	chr6:165722600-165723200	Active TSS	HUVEC	blood vessel
44	chr6:165722600-165723400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:165722600-165723400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr6:165722600-165723400	Active TSS	Fetal Brain Female	brain
47	chr6:165722600-165723400	Active TSS	Fetal Kidney	kidney
48	chr6:165722600-165723400	Active TSS	A549	lung
49	chr6:165722800-165723200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
50	chr6:165722800-165723200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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