Variant report

Variant	rs542358743
Chromosome Location	chr6:165723263-165723264
allele	-/TTT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr6:165722791-165723291	H1-hESC	embryonic stem cell:	n/a	chr6:165722817-165722827
2	TEAD4	chr6:165722906-165723294	H1-hESC	embryonic stem cell:	n/a	n/a
3	SIN3A	chr6:165722471-165723351	H1-hESC	embryonic stem cell:	n/a	chr6:165723168-165723181
4	MAX	chr6:165722235-165723305	H1-hESC	embryonic stem cell:	n/a	n/a
5	SIN3AK20	chr6:165722835-165723333	H1-hESC	embryonic stem cell:	n/a	n/a
6	MXI1	chr6:165722586-165723269	H1-hESC	embryonic stem cell:	n/a	chr6:165723107-165723122 chr6:165723109-165723124
7	MAZ	chr6:165722656-165723287	IMR90	lung:	n/a	n/a
8	MXI1	chr6:165722399-165723472	SK-N-SH	brain:	n/a	chr6:165723107-165723122 chr6:165723109-165723124
9	KAP1	chr6:165722299-165723318	HEK293	kidney:	n/a	n/a
10	POLR2A	chr6:165722619-165723296	H1-neurons	neurons:	n/a	n/a
11	ZNF143	chr6:165722814-165723314	H1-hESC	embryonic stem cell:	n/a	chr6:165723215-165723234
12	SIN3AK20	chr6:165722964-165723285	H1-hESC	embryonic stem cell:	n/a	n/a
13	E2F6	chr6:165722203-165723274	H1-hESC	embryonic stem cell:	n/a	chr6:165722645-165722660
14	E2F6	chr6:165722059-165723307	H1-hESC	embryonic stem cell:	n/a	chr6:165722645-165722660

Variant related genes	Relation type
C6orf118	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432982	chr6:165528589-165835589	Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv605245	chr6:165542686-165845903	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv1031648	chr6:165544569-165841029	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv432983	chr6:165554403-165851585	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	esv3417270	chr6:165682773-166023032	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv5586	chr6:165694448-165747217	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv508438	chr6:165703355-165760649	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv3499772	chr6:165715090-165732713	Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3499773	chr6:165715090-165732713	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv1812650	chr6:165716093-165737153	Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3493315	chr6:165721412-165733110	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3493316	chr6:165721412-165733110	Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv886928	chr6:165722345-166197889	Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
14	esv3471965	chr6:165722662-165733960	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv1805588	chr6:165722947-165731848	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165722400-165723400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:165722400-165723400	Active TSS	Brain Germinal Matrix	brain
3	chr6:165722600-165723400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:165722600-165723400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:165722600-165723400	Active TSS	Fetal Brain Female	brain
6	chr6:165722600-165723400	Active TSS	Fetal Kidney	kidney
7	chr6:165722600-165723400	Active TSS	A549	lung
8	chr6:165722800-165723400	Active TSS	Duodenum Mucosa	Duodenum
9	chr6:165722800-165723400	Active TSS	Fetal Muscle Leg	muscle
10	chr6:165722800-165723600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr6:165723000-165724400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:165723200-165723400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:165723200-165723400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:165723200-165723400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
15	chr6:165723200-165723600	Enhancers	Fetal Lung	lung
16	chr6:165723200-165723600	Enhancers	Stomach Smooth Muscle	stomach
17	chr6:165723200-165723800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:165723200-165723800	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr6:165723200-165723800	Enhancers	Rectal Smooth Muscle	rectum
20	chr6:165723200-165726000	Weak transcription	Right Atrium	heart
21	chr6:165723200-165733800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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