Variant report

Variant	esv3521278
Chromosome Location	chr10:51635096-52001994
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr10:51976432-51976444	HepG2	liver:	n/a	n/a
2	ARID3A	chr10:51795319-51795585	HepG2	liver:	n/a	n/a
3	ARID3A	chr10:51994435-51994634	HepG2	liver:	n/a	n/a
4	ATF3	chr10:51827629-51827827	K562	blood:	n/a	chr10:51827638-51827647 chr10:51827653-51827662
5	ATF3	chr10:51827424-51827892	HepG2	liver:	n/a	chr10:51827638-51827647 chr10:51827653-51827662 chr10:51827627-51827647
6	ATF3	chr10:51827380-51827895	GM12878	blood:	n/a	chr10:51827638-51827647 chr10:51827653-51827662 chr10:51827627-51827647
7	ATF3	chr10:51827470-51827797	GM12878	blood:	n/a	chr10:51827638-51827647 chr10:51827653-51827662 chr10:51827627-51827647
8	ATF3	chr10:51827515-51827807	K562	blood:	n/a	chr10:51827638-51827647 chr10:51827653-51827662 chr10:51827627-51827647
9	ATF3	chr10:51827605-51827832	K562	blood:	n/a	chr10:51827638-51827647 chr10:51827653-51827662 chr10:51827627-51827647
10	ATF3	chr10:51827480-51827800	HepG2	liver:	n/a	chr10:51827638-51827647 chr10:51827653-51827662 chr10:51827627-51827647
11	ATF3	chr10:51827461-51827831	A549	lung:	n/a	chr10:51827638-51827647 chr10:51827653-51827662 chr10:51827627-51827647
12	ATF3	chr10:51827430-51827822	H1-hESC	embryonic stem cell:	n/a	chr10:51827638-51827647 chr10:51827653-51827662 chr10:51827627-51827647
13	ATF3	chr10:51827348-51827893	H1-hESC	embryonic stem cell:	n/a	chr10:51827638-51827647 chr10:51827653-51827662 chr10:51827627-51827647
14	BACH1	chr10:51781604-51781666	H1-hESC	embryonic stem cell:	n/a	n/a
15	BACH1	chr10:51724670-51724718	K562	blood:	n/a	n/a
16	BATF	chr10:51991390-51991694	GM12878	blood:	n/a	n/a
17	BATF	chr10:51805194-51805491	GM12878	blood:	n/a	chr10:51805300-51805311
18	BATF	chr10:51862154-51862357	GM12878	blood:	n/a	n/a
19	BATF	chr10:51827450-51827744	GM12878	blood:	n/a	n/a
20	BATF	chr10:51738026-51738254	GM12878	blood:	n/a	chr10:51738139-51738150
21	BATF	chr10:51984190-51984474	GM12878	blood:	n/a	n/a
22	BATF	chr10:51742187-51742413	GM12878	blood:	n/a	n/a
23	BATF	chr10:51827438-51827837	GM12878	blood:	n/a	n/a
24	BATF	chr10:51984168-51984477	GM12878	blood:	n/a	n/a
25	BATF	chr10:51872276-51872491	GM12878	blood:	n/a	chr10:51872379-51872390
26	BATF	chr10:51805209-51805431	GM12878	blood:	n/a	chr10:51805300-51805311
27	BATF	chr10:51922567-51922785	GM12878	blood:	n/a	n/a
28	BATF	chr10:51932652-51932839	GM12878	blood:	n/a	chr10:51932736-51932747
29	BATF	chr10:51862159-51862423	GM12878	blood:	n/a	n/a
30	BCL11A	chr10:51827384-51827837	GM12878	blood:	n/a	chr10:51827802-51827815
31	BCL11A	chr10:51811718-51812030	GM12878	blood:	n/a	chr10:51811922-51811931 chr10:51811994-51812003
32	BCL11A	chr10:51862053-51862459	GM12878	blood:	n/a	chr10:51862284-51862293 chr10:51862212-51862221
33	BCL11A	chr10:51862080-51862485	GM12878	blood:	n/a	chr10:51862212-51862221 chr10:51862284-51862293
34	BCL11A	chr10:51827511-51827755	GM12878	blood:	n/a	n/a
35	BCL11A	chr10:51811706-51812067	GM12878	blood:	n/a	chr10:51811922-51811931 chr10:51811994-51812003
36	BCL11A	chr10:51991318-51991679	GM12878	blood:	n/a	n/a
37	BCL11A	chr10:51861449-51861629	GM12878	blood:	n/a	n/a
38	BCLAF1	chr10:51827468-51827748	GM12878	blood:	n/a	n/a
39	BHLHE40	chr10:51862069-51862336	HepG2	liver:	n/a	n/a
40	BHLHE40	chr10:51861059-51861293	HepG2	liver:	n/a	n/a
41	BHLHE40	chr10:51811872-51812117	HepG2	liver:	n/a	n/a
42	BHLHE40	chr10:51827417-51827938	HepG2	liver:	n/a	chr10:51827620-51827633 chr10:51827652-51827661 chr10:51827638-51827647 chr10:51827651-51827664 chr10:51827653-51827662 chr10:51827638-51827647 chr10:51827616-51827637 chr10:51827653-51827662 chr10:51827637-51827646 chr10:51827632-51827653 chr10:51827636-51827649 chr10:51827639-51827648
43	BHLHE40	chr10:51827465-51827916	K562	blood:	n/a	chr10:51827620-51827633 chr10:51827652-51827661 chr10:51827638-51827647 chr10:51827651-51827664 chr10:51827653-51827662 chr10:51827638-51827647 chr10:51827616-51827637 chr10:51827653-51827662 chr10:51827637-51827646 chr10:51827632-51827653 chr10:51827636-51827649 chr10:51827639-51827648
44	BHLHE40	chr10:51827409-51827834	HepG2	liver:	n/a	chr10:51827620-51827633 chr10:51827652-51827661 chr10:51827638-51827647 chr10:51827651-51827664 chr10:51827653-51827662 chr10:51827638-51827647 chr10:51827616-51827637 chr10:51827653-51827662 chr10:51827637-51827646 chr10:51827632-51827653 chr10:51827636-51827649 chr10:51827639-51827648
45	BHLHE40	chr10:51827279-51827863	GM12878	blood:	n/a	chr10:51827620-51827633 chr10:51827652-51827661 chr10:51827638-51827647 chr10:51827651-51827664 chr10:51827653-51827662 chr10:51827638-51827647 chr10:51827616-51827637 chr10:51827653-51827662 chr10:51827637-51827646 chr10:51827632-51827653 chr10:51827636-51827649 chr10:51827639-51827648
46	BHLHE40	chr10:51827526-51827746	A549	lung:	n/a	chr10:51827620-51827633 chr10:51827652-51827661 chr10:51827638-51827647 chr10:51827651-51827664 chr10:51827653-51827662 chr10:51827638-51827647 chr10:51827616-51827637 chr10:51827653-51827662 chr10:51827637-51827646 chr10:51827632-51827653 chr10:51827636-51827649 chr10:51827639-51827648
47	BHLHE40	chr10:51903317-51903550	HepG2	liver:	n/a	n/a
48	BHLHE40	chr10:51812907-51813145	HepG2	liver:	n/a	n/a
49	BRCA1	chr10:51827557-51827754	GM12878	blood:	n/a	n/a
50	BRCA1	chr10:51827723-51827767	Hela-S3	cervix:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:51827487-51827537	NB4	blood:	n/a
2	chr10:51784749-51784799	SK-N-SH	brain:	n/a
3	chr10:51828127-51828177	SKMC	muscle:	n/a
4	chr10:51844517-51844567	GM06990	blood:	n/a
5	chr10:51784749-51784799	AG04449	skin:	fetal
6	chr10:51784749-51784799	LNCaP	prostate:	n/a
7	chr10:51747411-51747461	U87	brain:	n/a
8	chr10:51827739-51827789	MCF10A-Er-Src	breast:	n/a
9	chr10:51827487-51827537	NB4	blood:	n/a
10	chr10:51784749-51784799	SK-N-SH	brain:	n/a
11	chr10:51828127-51828177	SKMC	muscle:	n/a
12	chr10:51844517-51844567	GM06990	blood:	n/a
13	chr10:51784749-51784799	AG04449	skin:	fetal
14	chr10:51784749-51784799	LNCaP	prostate:	n/a
15	chr10:51747411-51747461	U87	brain:	n/a
16	chr10:51827739-51827789	MCF10A-Er-Src	breast:	n/a
17	chr10:51827739-51827789	U87	brain:	n/a
18	chr10:51787021-51787071	HRPEpiC	eye:	n/a
19	chr10:51784888-51784938	MCF10A-Er-Src	breast:	n/a
20	chr10:51746883-51746933	AG09319	gingival:	n/a
21	chr10:51827487-51827537	MCF10A-Er-Src	breast:	n/a
22	chr10:51827657-51827707	BJ	skin:	n/a
23	chr10:51784543-51784593	ProgFib	skin:	n/a
24	chr10:51827642-51827692	HCM	heart:	n/a
25	chr10:51827417-51827467	BJ	skin:	n/a
26	chr10:51911889-51911939	CMK	blood:	n/a
27	chr10:51784749-51784799	GM19239	blood:	n/a
28	chr10:51770067-51770117	NH-A	brain:	n/a
29	chr10:51784888-51784938	HRCEpiC	kidney:	n/a
30	chr10:51771551-51771601	SK-N-MC	brain:	n/a
31	chr10:51771551-51771601	SAEC	small airway:	n/a
32	chr10:51784543-51784593	ECC-1	luminal epithelium:	n/a
33	chr10:51767556-51767606	ECC-1	luminal epithelium:	n/a
34	chr10:51767556-51767606	U87	brain:	n/a
35	chr10:51828127-51828177	HepG2	liver:	n/a
36	chr10:51844517-51844567	IMR90	lung:	fetal
37	chr10:51828127-51828177	A549	lung:	n/a
38	chr10:51828127-51828177	ovcar-3	ovarian:	n/a
39	chr10:51826695-51826745	Jurkat	blood:	n/a
40	chr10:51827739-51827789	NB4	blood:	n/a
41	chr10:51827417-51827467	LNCaP	prostate:	n/a
42	chr10:51784543-51784593	HEEpiC	esophagus:	n/a
43	chr10:51827487-51827537	AG10803	skin:	n/a
44	chr10:51827739-51827789	Hepatocyte	liver:	n/a
45	chr10:51912805-51912855	NHDF-neo	bronchial:	n/a
46	chr10:51784749-51784799	AG04450	lung:	fetal
47	chr10:51784888-51784938	GM12878	blood:	n/a
48	chr10:51746883-51746933	Hela-S3	cervix:	n/a
49	chr10:51748232-51748282	AG10803	skin:	n/a
50	chr10:51912805-51912855	K562	blood:	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:51804151..51806195-chr10:51809153..51810917,2	K562	blood:
2	chr10:46222331..46222849-chr10:51827700..51828251,2	HCT-116	colon:
3	chr10:52001284..52004039-chr10:52006500..52009846,3	K562	blood:
4	chr10:51804151..51806195-chr10:51809153..51810917,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TIMM23B-1	chr10:51732595-51732902	ENSG00000178440.5
2	lnc-FAM21A-1	chr10:51803465-51804098	NONHSAT013372
3	lnc-TIMM23B-1	chr10:51732523-51732902	ENSG00000178440.4
4	lnc-TIMM23-1	chr10:51654977-51655307	NONHSAT013366
5	lnc-TIMM23B-1	chr10:51740949-51741041	ENSG00000178440.5
6	lnc-ASAH2-3	chr10:51847832-51848336	expReg_chr10_3296_-
7	lnc-TIMM23B-1	chr10:51741665-51741813	ENSG00000178440.5
8	lnc-AGAP6-1	chr10:51723005-51724217	NONHSAT013367
9	lnc-FAM21A-1	chr10:51804285-51804531	NONHSAT013372
10	lnc-ASAH2-2	chr10:51853159-51853378	NONHSAT013375
11	lnc-FAM21A-1	chr10:51803465-51804098	FPKM1_group_3326_transcript_7
12	lnc-TIMM23B-1	chr10:51740949-51741041	ENSG00000178440.4
13	lnc-TIMM23B-1	chr10:51732595-51732902	ENSG00000178440.4
14	lnc-FAM21A-1	chr10:51803547-51803793	FPKM1_group_3326_transcript_7
15	lnc-TIMM23B-1	chr10:51740949-51741130	ENSG00000178440.4
16	lnc-TIMM23B-1	chr10:51741665-51741805	ENSG00000178440.4

Variant related genes	Relation type
LINC00843	TF binding region
AGAP6	TF binding region
SLC9A3P1	TF binding region
RNA5SP317	TF binding region
FAM21A	TF binding region
SLC9A3P3	TF binding region
ASAH2	TF binding region
ENSG00000235618	TF binding region
ENSG00000229464	TF binding region
LINC00843	CpG island
AGAP6	CpG island
SLC9A3P1	CpG island
RNA5SP317	CpG island
FAM21A	CpG island
SLC9A3P3	CpG island
ASAH2	CpG island
ENSG00000235618	CpG island
ENSG00000229464	CpG island
ENSG00000188611	chromatin interactions
ENSG00000172661	chromatin interactions
ENSG00000237840	chromatin interactions

Extended variants
information (count: 4771 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:4771 , 50 per page) page: 1 2 3 4 5 6 7 ... 96

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs587670156	chr10:51635201-51635202	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs587723625	chr10:51635285-51635286	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs375951994	chr10:51635349-51635350	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs375463088	chr10:51635412-51635413	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs7474814	chr10:51635506-51635507	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs587605865	chr10:51635512-51635513	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs587653573	chr10:51635564-51635565	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs587762186	chr10:51635576-51635577	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs79287804	chr10:51635581-51635582	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs587635826	chr10:51635642-51635643	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs587717415	chr10:51635649-51635650	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs587752166	chr10:51635821-51635822	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs587767311	chr10:51635915-51635916	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs587622892	chr10:51635938-51635939	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs587686353	chr10:51635975-51635976	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs2812978	chr10:51636151-51636152	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs587762770	chr10:51636180-51636181	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs587620045	chr10:51636198-51636199	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs188446577	chr10:51636200-51636201	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs587759774	chr10:51636392-51636393	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs376840798	chr10:51636409-51636410	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs112832056	chr10:51636772-51636773	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs183406848	chr10:51636990-51636991	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs111850131	chr10:51654997-51654998	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs112649534	chr10:51655082-51655083	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs587742283	chr10:51658126-51658127	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
27	rs587623657	chr10:51658150-51658151	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
28	rs587593956	chr10:51658187-51658188	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
29	rs587681503	chr10:51658202-51658203	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
30	rs367869419	chr10:51659691-51659692	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
31	rs202208665	chr10:51721918-51721919	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs200326970	chr10:51722424-51722425	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs12258465	chr10:51722495-51722496	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs3098108	chr10:51722705-51722706	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs7916557	chr10:51722812-51722813	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs529306936	chr10:51722867-51722868	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs543075457	chr10:51722931-51722932	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs201151290	chr10:51722976-51722977	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs201375932	chr10:51723058-51723059	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
40	rs528641723	chr10:51723128-51723129	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
41	rs572718742	chr10:51723169-51723170	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
42	rs571552150	chr10:51723170-51723171	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
43	rs2813130	chr10:51723190-51723191	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
44	rs148924324	chr10:51723199-51723200	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
45	rs28824264	chr10:51723207-51723208	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
46	rs550894390	chr10:51723214-51723215	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
47	rs181244678	chr10:51723219-51723220	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
48	rs61847126	chr10:51723270-51723271	Weak transcription Strong transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
49	rs61847127	chr10:51723277-51723278	Weak transcription Strong transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
50	rs185633496	chr10:51723326-51723327	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:66)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Renal cell carcinoma	18765545	CNVD
Developmental delay	21948486	CNVD
Dysmorphic features	21948486	CNVD
Epilepsy	21948486	CNVD
Breast cancer	21785460	CNVD
Intellectual disability	21948486	CNVD
Intellectual disability	22045946	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
skeletal anomalies	21948486	CNVD
Autism	21948486	CNVD
speech delay	21948486	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Metanephric adenoma	20802469	CNVD
Melanoma	17363583	CNVD
Pancreatic cancer	17952125	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD
Autism	20841430	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:663 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:51624000-51636600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:51624000-51637000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr10:51721600-51723200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:51721600-51723200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr10:51721800-51751800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:51721800-51752000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:51721800-51752000	Weak transcription	Adipose Nuclei	Adipose
8	chr10:51721800-51777800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:51722000-51723600	Weak transcription	Fetal Intestine Small	intestine
10	chr10:51722000-51732800	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr10:51722000-51752200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:51722000-51767600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr10:51722200-51723800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:51722200-51723800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:51722200-51729400	Weak transcription	Fetal Intestine Large	intestine
16	chr10:51722200-51734400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr10:51722200-51752000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:51722400-51738800	Weak transcription	A549	lung
19	chr10:51722400-51743200	Weak transcription	Osteobl	bone
20	chr10:51722400-51743800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr10:51722400-51752200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr10:51722400-51754200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr10:51722400-51770800	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr10:51722400-51775800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:51722400-51775800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:51722400-51777000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr10:51722600-51752200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr10:51722600-51753000	Weak transcription	Fetal Stomach	stomach
29	chr10:51722600-51758600	Weak transcription	Left Ventricle	heart
30	chr10:51722600-51765800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr10:51722600-51770200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr10:51722600-51771200	Weak transcription	Duodenum Mucosa	Duodenum
33	chr10:51722600-51771400	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr10:51722800-51757800	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr10:51722800-51771200	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr10:51723200-51724200	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr10:51723200-51724800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr10:51723200-51753000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr10:51723400-51726200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr10:51723400-51772800	Weak transcription	Fetal Muscle Trunk	muscle
41	chr10:51723600-51724200	Strong transcription	Fetal Intestine Small	intestine
42	chr10:51723600-51771000	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr10:51723800-51724200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr10:51723800-51724200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr10:51723800-51738400	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr10:51724200-51732800	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr10:51724200-51754000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr10:51724200-51771400	Weak transcription	Fetal Intestine Small	intestine
49	chr10:51724200-51775200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr10:51724800-51728600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links