Variant report

Variant	rs2813130
Chromosome Location	chr10:51723190-51723191
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AGAP6-1	chr10:51723005-51724217	NONHSAT013367

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758219	chr10:50971974-51925166	Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	esv2759749	chr10:50971974-51925166	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv428232	chr10:50971974-51925166	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	esv1830900	chr10:51187411-51903662	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
5	nsv895383	chr10:51260747-51724915	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	esv1815597	chr10:51525699-51804254	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv518071	chr10:51595893-52157935	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
8	nsv1054775	chr10:51595893-52392361	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
9	esv3521278	chr10:51635096-52001994	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	esv3521279	chr10:51635096-52001994	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	esv3394384	chr10:51635596-51723744	Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv895389	chr10:51659173-51724915	Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv8654	chr10:51680147-51724915	Strong transcription Weak transcription	lncRNA	n/a	inside rSNPs	diseases
14	nsv947998	chr10:51700648-51724915	Strong transcription Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:51721600-51723200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr10:51721600-51723200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr10:51721800-51751800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr10:51721800-51752000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:51721800-51752000	Weak transcription	Adipose Nuclei	Adipose
6	chr10:51721800-51777800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:51722000-51723600	Weak transcription	Fetal Intestine Small	intestine
8	chr10:51722000-51732800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr10:51722000-51752200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr10:51722000-51767600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr10:51722200-51723800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:51722200-51723800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:51722200-51729400	Weak transcription	Fetal Intestine Large	intestine
14	chr10:51722200-51734400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr10:51722200-51752000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:51722400-51738800	Weak transcription	A549	lung
17	chr10:51722400-51743200	Weak transcription	Osteobl	bone
18	chr10:51722400-51743800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr10:51722400-51752200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr10:51722400-51754200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr10:51722400-51770800	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr10:51722400-51775800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr10:51722400-51775800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:51722400-51777000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr10:51722600-51752200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:51722600-51753000	Weak transcription	Fetal Stomach	stomach
27	chr10:51722600-51758600	Weak transcription	Left Ventricle	heart
28	chr10:51722600-51765800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr10:51722600-51770200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr10:51722600-51771200	Weak transcription	Duodenum Mucosa	Duodenum
31	chr10:51722600-51771400	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr10:51722800-51757800	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr10:51722800-51771200	Weak transcription	Primary T cells fromperipheralblood	blood

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