Variant report

Variant	esv3529726
Chromosome Location	chr1:155659644-155664581
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:127)
CpG islands
(count:122)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:127 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr1:155661890-155662275	K562	blood:	n/a	n/a
2	ATF1	chr1:155661656-155662250	K562	blood:	n/a	n/a
3	BCLAF1	chr1:155661762-155662351	K562	blood:	n/a	n/a
4	CBX3	chr1:155661692-155662517	K562	blood:	n/a	n/a
5	CBX3	chr1:155660893-155662671	K562	blood:	n/a	n/a
6	CEBPB	chr1:155661110-155661314	HepG2	liver:	n/a	chr1:155661227-155661238
7	CEBPB	chr1:155663681-155663772	HepG2	liver:	n/a	chr1:155663702-155663713
8	CEBPB	chr1:155661694-155662237	K562	blood:	n/a	n/a
9	CEBPB	chr1:155661117-155661323	A549	lung:	n/a	chr1:155661227-155661238
10	CEBPD	chr1:155661775-155662304	K562	blood:	n/a	n/a
11	CEBPD	chr1:155661726-155662303	K562	blood:	n/a	n/a
12	CUX1	chr1:155662065-155662178	K562	blood:	n/a	n/a
13	EP300	chr1:155659829-155659879	K562	blood:	n/a	n/a
14	EP300	chr1:155661707-155662283	K562	blood:	n/a	n/a
15	EP300	chr1:155662024-155662298	K562	blood:	n/a	n/a
16	ESR1	chr1:155660424-155660732	T-47D	breast:	n/a	n/a
17	ESR1	chr1:155660448-155660708	T-47D	breast:	n/a	n/a
18	FOXA1	chr1:155660455-155660714	T-47D	breast:	n/a	n/a
19	FOXA1	chr1:155660464-155660723	HepG2	liver:	n/a	n/a
20	FOXA1	chr1:155660411-155660643	T-47D	breast:	n/a	n/a
21	FOXA1	chr1:155660290-155660709	HepG2	liver:	n/a	n/a
22	FOXA2	chr1:155660416-155660659	HepG2	liver:	n/a	n/a
23	GABPA	chr1:155661744-155662173	K562	blood:	n/a	n/a
24	GATA1	chr1:155661632-155662263	PBDE	blood:	n/a	n/a
25	GATA2	chr1:155661723-155662169	K562	blood:	n/a	n/a
26	GATA2	chr1:155661591-155662347	K562	blood:	n/a	n/a
27	GATA3	chr1:155660483-155660643	SH-SY5Y	brain:	n/a	n/a
28	GATA3	chr1:155660321-155660793	T-47D	breast:	n/a	n/a
29	GATA3	chr1:155660348-155660680	MCF-7	breast:	n/a	n/a
30	GATA3	chr1:155660261-155660768	T-47D	breast:	n/a	n/a
31	GATA3	chr1:155660258-155660791	MCF-7	breast:	n/a	n/a
32	GATA3	chr1:155660055-155660701	MCF-7	breast:	n/a	n/a
33	GATA3	chr1:155660109-155660771	MCF-7	breast:	n/a	n/a
34	GTF2F1	chr1:155662151-155662153	K562	blood:	n/a	n/a
35	HA-E2F1	chr1:155660432-155661093	MCF-7	breast:	n/a	n/a
36	HEY1	chr1:155659591-155660372	K562	blood:	n/a	n/a
37	IRF1	chr1:155661836-155662265	K562	blood:	n/a	n/a
38	IRF1	chr1:155661413-155661503	K562	blood:	n/a	n/a
39	JUN	chr1:155661901-155662264	K562	blood:	n/a	n/a
40	JUN	chr1:155661537-155662636	K562	blood:	n/a	n/a
41	JUND	chr1:155661634-155662229	K562	blood:	n/a	n/a
42	KAP1	chr1:155661095-155662950	K562	blood:	n/a	n/a
43	MAX	chr1:155660409-155660780	MCF-7	breast:	n/a	n/a
44	MAX	chr1:155662037-155662230	K562	blood:	n/a	n/a
45	MAX	chr1:155660486-155660783	K562	blood:	n/a	n/a
46	MAX	chr1:155661693-155662302	K562	blood:	n/a	n/a
47	MAZ	chr1:155661910-155662152	K562	blood:	n/a	n/a
48	MXI1	chr1:155657636-155660213	SK-N-SH	brain:	n/a	n/a
49	MYC	chr1:155661910-155662151	K562	blood:	n/a	n/a
50	MYC	chr1:155660401-155660411	MCF10A-Er-Src	breast:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:155659719-155659769	PFSK-1	brain:	n/a
2	chr1:155659719-155659769	ProgFib	skin:	n/a
3	chr1:155663085-155663135	HepG2	liver:	n/a
4	chr1:155663085-155663135	Hepatocyte	liver:	n/a
5	chr1:155663085-155663135	A549	lung:	n/a
6	chr1:155663085-155663135	NHDF-neo	bronchial:	n/a
7	chr1:155663085-155663135	HCM	heart:	n/a
8	chr1:155663085-155663135	PrEC	prostate:	n/a
9	chr1:155659719-155659769	AG10803	skin:	n/a
10	chr1:155659719-155659769	SAEC	small airway:	n/a
11	chr1:155663085-155663135	U87	brain:	n/a
12	chr1:155659719-155659769	AG09309	skin:	n/a
13	chr1:155663085-155663135	H1-hESC	embryonic stem cell:	embryo
14	chr1:155663085-155663135	GM06990	blood:	n/a
15	chr1:155659719-155659769	HNPCEpiC	eye:	n/a
16	chr1:155663085-155663135	IMR90	lung:	fetal
17	chr1:155659719-155659769	HAEpiC	amniotic membrane:	n/a
18	chr1:155663085-155663135	HUVEC	blood vessel:	n/a
19	chr1:155659719-155659769	HPAEpiC	pulmonary alveolar:	n/a
20	chr1:155659719-155659769	NHBE	bronchial:	n/a
21	chr1:155663085-155663135	AG04450	lung:	fetal
22	chr1:155659719-155659769	SK-N-SH	brain:	n/a
23	chr1:155659719-155659769	GM19239	blood:	n/a
24	chr1:155663085-155663135	HEEpiC	esophagus:	n/a
25	chr1:155659719-155659769	GM06990	blood:	n/a
26	chr1:155659719-155659769	AoSMC	blood vessel:	n/a
27	chr1:155659719-155659769	GM12878	blood:	n/a
28	chr1:155663085-155663135	LNCaP	prostate:	n/a
29	chr1:155663085-155663135	MCF10A-Er-Src	breast:	n/a
30	chr1:155659719-155659769	NHDF-neo	bronchial:	n/a
31	chr1:155659719-155659769	H1-hESC	embryonic stem cell:	embryo
32	chr1:155663085-155663135	AG04449	skin:	fetal
33	chr1:155659719-155659769	AG04449	skin:	fetal
34	chr1:155663085-155663135	HMEC	breast:	n/a
35	chr1:155663085-155663135	SK-N-MC	brain:	n/a
36	chr1:155663085-155663135	HEK293	kidney:	embryo
37	chr1:155659719-155659769	PANC-1	pancreas:	n/a
38	chr1:155659719-155659769	HRCEpiC	kidney:	n/a
39	chr1:155663085-155663135	SKMC	muscle:	n/a
40	chr1:155663085-155663135	ProgFib	skin:	n/a
41	chr1:155659719-155659769	NB4	blood:	n/a
42	chr1:155663085-155663135	BE2_C	brain:	n/a
43	chr1:155663085-155663135	CMK	blood:	n/a
44	chr1:155659719-155659769	SK-N-MC	brain:	n/a
45	chr1:155659719-155659769	SK-N-SH_RA	brain:	n/a
46	chr1:155663085-155663135	HCPEpiC	choroid plexus:	n/a
47	chr1:155663085-155663135	Caco-2	colon:	n/a
48	chr1:155663085-155663135	SK-N-SH	brain:	n/a
49	chr1:155663085-155663135	NHBE	bronchial:	n/a
50	chr1:155663085-155663135	AG09319	gingival:	n/a

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:155531220..155534536-chr1:155656727..155659727,4	MCF-7	breast:
2	chr1:155647841..155650282-chr1:155658064..155659902,2	MCF-7	breast:
3	chr1:155660408..155662039-chr1:156023263..156025493,2	K562	blood:
4	chr1:155646937..155653370-chr1:155653884..155660272,11	K562	blood:
5	chr1:155658633..155662039-chr1:156022948..156025065,3	K562	blood:
6	chr1:155662296..155664287-chr1:155670196..155672385,2	MCF-7	breast:
7	chr1:155650232..155654143-chr1:155656732..155660370,8	MCF-7	breast:
8	chr1:155293644..155295180-chr1:155658200..155659752,2	MCF-7	breast:
9	chr1:155531168..155533264-chr1:155658199..155660031,3	MCF-7	breast:
10	chr1:155530812..155532531-chr1:155657028..155659724,4	K562	blood:
11	chr1:155656893..155661917-chr1:155662515..155668604,13	MCF-7	breast:
12	chr1:155195691..155197531-chr1:155658226..155660788,2	K562	blood:
13	chr1:155658521..155660214-chr1:164740544..164742861,2	MCF-7	breast:
14	chr1:155656565..155660782-chr1:155662182..155667108,10	MCF-7	breast:

No data

Variant related genes	Relation type
YY1AP1	TF binding region
YY1AP1	CpG island
ENSG00000160766	chromatin interactions
ENSG00000116586	chromatin interactions
ENSG00000235919	chromatin interactions
ENSG00000163374	chromatin interactions
ENSG00000225855	chromatin interactions
ENSG00000116539	chromatin interactions
ENSG00000185630	chromatin interactions
ENSG00000132676	chromatin interactions
ENSG00000160753	chromatin interactions
ENSG00000160803	chromatin interactions

Extended variants
information (count: 208 )
Associated
traits (count: 99 )

Variant overlapped rSNPs/rCNVs (count:208 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs535394205	chr1:155659668-155659669	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
2	rs367648937	chr1:155659680-155659681	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
3	rs547425291	chr1:155659688-155659689	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
4	rs111507077	chr1:155659698-155659699	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
5	rs3041216	chr1:155659699-155659700	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
6	rs5777952	chr1:155659718-155659719	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
7	rs565605283	chr1:155659759-155659760	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
8	rs531460446	chr1:155659764-155659765	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
9	rs539544097	chr1:155659782-155659783	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
10	rs558048964	chr1:155659808-155659809	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
11	rs576612058	chr1:155659817-155659818	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
12	rs79219887	chr1:155659849-155659850	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
13	rs568404428	chr1:155659918-155659919	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
14	rs555685042	chr1:155659929-155659930	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
15	rs114425448	chr1:155659961-155659962	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
16	rs540983394	chr1:155659983-155659984	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
17	rs534182375	chr1:155659991-155659992	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
18	rs554338333	chr1:155660026-155660027	Active TSS Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
19	rs559710390	chr1:155660062-155660063	Active TSS Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
20	rs578012845	chr1:155660069-155660070	Active TSS Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
21	rs570944942	chr1:155660104-155660105	Active TSS Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
22	rs139624038	chr1:155660110-155660111	Active TSS Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
23	rs564110028	chr1:155660112-155660113	Active TSS Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
24	rs142619787	chr1:155660118-155660119	Active TSS Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
25	rs150582175	chr1:155660160-155660161	Active TSS Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
26	rs556455264	chr1:155660246-155660247	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
27	rs12747561	chr1:155660281-155660282	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
28	rs12751878	chr1:155660396-155660397	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
29	rs181829794	chr1:155660459-155660460	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
30	rs561924729	chr1:155660483-155660484	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
31	rs79748779	chr1:155660539-155660540	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
32	rs529218868	chr1:155660556-155660557	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
33	rs547051278	chr1:155660589-155660590	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
34	rs576680986	chr1:155660591-155660592	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
35	rs139634574	chr1:155660640-155660641	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
36	rs377195817	chr1:155660650-155660651	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
37	rs370553159	chr1:155660663-155660664	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
38	rs551497185	chr1:155660706-155660707	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
39	rs186117638	chr1:155660711-155660712	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
40	rs537200322	chr1:155660735-155660736	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
41	rs376455666	chr1:155660759-155660760	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
42	rs555547517	chr1:155660768-155660769	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
43	rs573959136	chr1:155660847-155660848	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
44	rs535006408	chr1:155660849-155660850	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
45	rs542196727	chr1:155660853-155660854	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
46	rs369436312	chr1:155660855-155660856	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
47	rs528688831	chr1:155660871-155660872	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
48	rs553070527	chr1:155660927-155660928	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
49	rs577995646	chr1:155660973-155660974	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
50	rs545161780	chr1:155661004-155661005	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:99)

Disease	PMID	Source
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Liposarcoma	21253554	CNVD
Non-small cell lung cancer	21385341	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	18698080	CNVD
Melanoma	18172304	CNVD
Breast cancer	17393978	CNVD
Cervical cancer	21062161	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	21183584	CNVD
Multiple myeloma	16461302	CNVD
Lung cancer	18438408	CNVD
Rett syndrome	21593744	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Medulloblastoma	21979893	CNVD
Systemic lupus erythematosus	21956041	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17133270	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Non-small cell lung cancer	21829676	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Non-small cell lung cancer	21044232	CNVD
Cervical cancer	21063398	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	20632083	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	21264507	CNVD
Multiple myeloma	21628407	CNVD
Cancer	16751803	CNVD
Prostate cancer	16705090	CNVD
Neuroblastoma	19435921	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16461572	CNVD
Intracranial tumor	16823260	CNVD
Medulloblastoma	18056178	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Neuroblastoma	21899760	CNVD
Breast cancer	17899364	CNVD
Bladder cancer	19088036	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	21858162	CNVD
Retinoblastoma	19183342	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	16608533	CNVD
Ewing''s sarcoma	22429812	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Ewing''s sarcoma	17952124	CNVD
Cancer	17060936	CNVD
Multiple myeloma	16616336	CNVD
Type 2 diabetes	19141583	CNVD
Chordoma	18071362	CNVD
Hepatocellular carcinoma	18803288	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17001317	CNVD
Urothelial carcinoma	21177765	CNVD
Burkitt''s lymphoma	19759907	CNVD
Acute myeloid leukemia	21251322	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21509527	CNVD
Bladder cancer	21909424	CNVD
Acute myeloid leukemia	20729466	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Testicular germ cell tumor	18059402	CNVD
Trisomy 5 syndrome	21098271	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD
Glioblastoma multiforme	21138945	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21611746	CNVD
Neuroblastoma	18923191	CNVD
Myelofibrosis	22110671	CNVD
Liver carcinoma	19366792	CNVD
Dihydropyrimidine dehydrogenase deficiency	18421352	CNVD

Chromatin state (count:588 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155656200-155659800	Active TSS	HSMMtube	muscle
2	chr1:155656200-155659800	Active TSS	NHDF-Ad	bronchial
3	chr1:155656200-155660000	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr1:155656200-155660200	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr1:155656400-155659800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:155656400-155659800	Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr1:155656400-155659800	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr1:155656400-155659800	Active TSS	Thymus	Thymus
9	chr1:155656400-155659800	Active TSS	GM12878-XiMat	blood
10	chr1:155656400-155660000	Active TSS	Fetal Kidney	kidney
11	chr1:155656400-155660200	Active TSS	HSMM	muscle
12	chr1:155656400-155660200	Active TSS	NHLF	lung
13	chr1:155656400-155660400	Active TSS	Breast Myoepithelial Primary Cells	Breast
14	chr1:155656600-155659800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:155656600-155659800	Active TSS	Primary T helper cells PMA-I stimulated	--
16	chr1:155656600-155659800	Active TSS	Brain Hippocampus Middle	brain
17	chr1:155656600-155659800	Active TSS	Fetal Intestine Small	intestine
18	chr1:155656600-155659800	Active TSS	Stomach Smooth Muscle	stomach
19	chr1:155656600-155659800	Active TSS	HMEC	breast
20	chr1:155656600-155659800	Active TSS	NH-A	brain
21	chr1:155656600-155660000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:155656600-155660000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr1:155656600-155660000	Active TSS	iPS-15b Cell Line	embryonic stem cell
24	chr1:155656600-155660000	Active TSS	Duodenum Mucosa	Duodenum
25	chr1:155656600-155660000	Active TSS	A549	lung
26	chr1:155656600-155660000	Active TSS	Hela-S3	cervix
27	chr1:155656600-155660000	Active TSS	K562	blood
28	chr1:155656600-155660000	Active TSS	NHEK	skin
29	chr1:155656600-155660200	Active TSS	Muscle Satellite Cultured Cells	--
30	chr1:155656600-155660200	Active TSS	Rectal Smooth Muscle	rectum
31	chr1:155656800-155660200	Active TSS	HUES48 Cell Line	embryonic stem cell
32	chr1:155657200-155659800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr1:155657200-155659800	Active TSS	iPS-18 Cell Line	embryonic stem cell
34	chr1:155657200-155659800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr1:155657200-155660000	Active TSS	HUES64 Cell Line	embryonic stem cell
36	chr1:155657200-155660200	Active TSS	iPS-20b Cell Line	embryonic stem cell
37	chr1:155657200-155660400	Active TSS	ES-I3 Cell Line	embryonic stem cell
38	chr1:155657400-155659800	Active TSS	Fetal Stomach	stomach
39	chr1:155657400-155660000	Active TSS	H1 Cell Line	embryonic stem cell
40	chr1:155657400-155660000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr1:155657400-155660400	Active TSS	H9 Cell Line	embryonic stem cell
42	chr1:155657600-155659800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr1:155657600-155659800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr1:155657600-155659800	Active TSS	Psoas Muscle	Psoas
45	chr1:155657600-155660000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr1:155657600-155660000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
47	chr1:155657800-155659800	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
48	chr1:155657800-155659800	Active TSS	Colon Smooth Muscle	Colon
49	chr1:155657800-155659800	Active TSS	Stomach Mucosa	stomach
50	chr1:155657800-155660000	Active TSS	ES-WA7 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links