Variant report

Variant	rs570944942
Chromosome Location	chr1:155660104-155660105
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:8)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:8 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr1:155660046-155660221	K562	blood:	n/a	n/a
2	HEY1	chr1:155659591-155660372	K562	blood:	n/a	n/a
3	MXI1	chr1:155657636-155660213	SK-N-SH	brain:	n/a	n/a
4	GATA3	chr1:155660055-155660701	MCF-7	breast:	n/a	n/a
5	POLR2A	chr1:155659949-155660348	K562	blood:	n/a	n/a
6	POLR2A	chr1:155659905-155660407	K562	blood:	n/a	n/a
7	POLR2A	chr1:155660001-155660634	K562	blood:	n/a	n/a
8	POLR2A	chr1:155656320-155660418	GM12892	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:155650232..155654143-chr1:155656732..155660370,8	MCF-7	breast:
2	chr1:155658633..155662039-chr1:156022948..156025065,3	K562	blood:
3	chr1:155658521..155660214-chr1:164740544..164742861,2	MCF-7	breast:
4	chr1:155646937..155653370-chr1:155653884..155660272,11	K562	blood:
5	chr1:155195691..155197531-chr1:155658226..155660788,2	K562	blood:

No data

Variant related genes	Relation type
YY1AP1	TF binding region
ENSG00000163374	Chromatin interaction
ENSG00000116586	Chromatin interaction
ENSG00000160766	Chromatin interaction
ENSG00000185630	Chromatin interaction
ENSG00000160803	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529709	chr1:155154933-155757219	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
2	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
3	esv3431739	chr1:155514331-155664183	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv1002390	chr1:155553423-155706930	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	nsv428246	chr1:155558197-155785831	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	nsv436522	chr1:155559513-155674249	Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
7	esv3360339	chr1:155562157-155683127	Active TSS Flanking Active TSS Genic enhancers Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
8	nsv547965	chr1:155563152-155688600	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
9	esv3381327	chr1:155582853-155718436	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
10	esv3436971	chr1:155618172-155733386	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
11	esv3338099	chr1:155618190-155733359	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
12	nsv3054	chr1:155653835-155673509	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	n/a
13	esv3339868	chr1:155658028-155662426	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	n/a
14	esv3529730	chr1:155658528-155665576	Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	n/a
15	esv3319427	chr1:155658853-155661701	Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	n/a
16	esv3319428	chr1:155658853-155661701	Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	n/a
17	esv3529724	chr1:155659028-155665126	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	n/a
18	esv3319429	chr1:155659028-155665326	Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	n/a
19	esv3452512	chr1:155659621-155664566	Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	n/a
20	esv3529726	chr1:155659644-155664581	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	n/a
21	esv3529725	chr1:155659667-155664604	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	n/a
22	esv3452511	chr1:155659675-155664534	Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	n/a
23	esv3529727	chr1:155659701-155664609	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	n/a
24	esv3452510	chr1:155659746-155664469	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	n/a
25	esv15603	chr1:155659754-155664482	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	n/a
26	esv3529731	chr1:155659756-155664467	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	n/a
27	esv3452513	chr1:155659760-155664465	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	n/a
28	esv3529732	chr1:155659760-155664465	Strong transcription Enhancers ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	n/a
29	nsv514012	chr1:155659776-155664208	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155656200-155660200	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr1:155656400-155660200	Active TSS	HSMM	muscle
3	chr1:155656400-155660200	Active TSS	NHLF	lung
4	chr1:155656400-155660400	Active TSS	Breast Myoepithelial Primary Cells	Breast
5	chr1:155656600-155660200	Active TSS	Muscle Satellite Cultured Cells	--
6	chr1:155656600-155660200	Active TSS	Rectal Smooth Muscle	rectum
7	chr1:155656800-155660200	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr1:155657200-155660200	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr1:155657200-155660400	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr1:155657400-155660400	Active TSS	H9 Cell Line	embryonic stem cell
11	chr1:155658200-155660200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr1:155659000-155660200	Flanking Active TSS	Primary hematopoietic stem cells	blood
13	chr1:155659200-155660400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr1:155659400-155660200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
15	chr1:155659400-155660200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr1:155659400-155660400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
17	chr1:155659400-155660600	Enhancers	Fetal Brain Male	brain
18	chr1:155659400-155668200	Weak transcription	Aorta	Aorta
19	chr1:155659600-155660200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr1:155659600-155660200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr1:155659600-155660200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
22	chr1:155659600-155660200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
23	chr1:155659600-155660200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
24	chr1:155659600-155660200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr1:155659600-155660200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr1:155659600-155660200	Flanking Active TSS	Adipose Nuclei	Adipose
27	chr1:155659600-155660200	Flanking Active TSS	Liver	Liver
28	chr1:155659600-155660200	Flanking Active TSS	HUVEC	blood vessel
29	chr1:155659600-155660200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr1:155659600-155660200	Flanking Active TSS	Osteobl	bone
31	chr1:155659600-155660400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr1:155659600-155660400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr1:155659600-155660400	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr1:155659600-155660400	Enhancers	Primary B cells from peripheral blood	blood
35	chr1:155659600-155660400	Flanking Active TSS	Primary T cells from cord blood	blood
36	chr1:155659600-155660400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr1:155659600-155660400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
38	chr1:155659600-155660400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr1:155659600-155660400	Flanking Active TSS	Brain Anterior Caudate	brain
40	chr1:155659600-155660400	Flanking Active TSS	Fetal Brain Female	brain
41	chr1:155659600-155660400	Enhancers	Fetal Muscle Trunk	muscle
42	chr1:155659600-155660400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
43	chr1:155659600-155660400	Enhancers	Sigmoid Colon	Sigmoid Colon
44	chr1:155659600-155660400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
45	chr1:155659600-155660400	Flanking Active TSS	Dnd41	blood
46	chr1:155659600-155660800	Enhancers	Spleen	Spleen
47	chr1:155659600-155664600	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr1:155659600-155666400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr1:155659800-155660200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr1:155659800-155660200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links