Variant report
Variant | esv7036 |
---|---|
Chromosome Location | chr4:167004137-167005158 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs544152585 | chr4:167004142-167004143 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs570704328 | chr4:167004227-167004228 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs555111436 | chr4:167004236-167004237 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs539634196 | chr4:167004273-167004274 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs147836065 | chr4:167004316-167004317 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs372321920 | chr4:167004408-167004409 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs533041278 | chr4:167004434-167004435 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs112619127 | chr4:167004444-167004445 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs186166289 | chr4:167004462-167004463 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs74948170 | chr4:167004515-167004516 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs115777640 | chr4:167004540-167004541 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs111702452 | chr4:167004621-167004622 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs575053176 | chr4:167004651-167004652 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs527683717 | chr4:167004664-167004665 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs567928368 | chr4:167004704-167004705 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs538166528 | chr4:167004731-167004732 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs113255426 | chr4:167004769-167004770 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs76126663 | chr4:167004797-167004798 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs189854892 | chr4:167004798-167004799 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs375320971 | chr4:167004824-167004825 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs7659851 | chr4:167004871-167004872 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
22 | rs572228296 | chr4:167004902-167004903 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs377740051 | chr4:167004915-167004916 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs150378758 | chr4:167004919-167004920 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs533703896 | chr4:167004920-167004921 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs555151423 | chr4:167004926-167004927 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs573829641 | chr4:167004931-167004932 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs544225601 | chr4:167004963-167004964 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs181116391 | chr4:167005008-167005009 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs77064330 | chr4:167005017-167005018 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs114503767 | chr4:167005025-167005026 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs545104317 | chr4:167005054-167005055 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs560264089 | chr4:167005100-167005101 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs527400975 | chr4:167005111-167005112 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs185658742 | chr4:167005130-167005131 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Acute lymphoblastic leukemia | 22237106 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Chordoma | 21602918 | CNVD |
HIV/AIDS | 22032296 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Breast cancer | 21858162 | CNVD |
Small bowel adenocarcinoma | 21586687 | CNVD |
Gastric cancer | 21586687 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Breast cancer | 17603634 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Malignant mesothelioma | 18160781 | CNVD |
Medulloblastoma | 18056178 | CNVD |
Multiple myeloma | 17077331 | CNVD |
Pleural malignant mesothelioma | 18160781 | CNVD |
Primary mediastinal b-cell lymphoma | 17728785 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
4q-syndrome | 17576883 | CNVD |
Cancer | 21637783 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Muscular dystrophy | 21149563 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Liposarcoma | 21253554 | CNVD |
Oligodendroglial tumors | 17285580 | CNVD |
Cervical cancer | 21062161 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Breast cancer | 16608533 | CNVD |
Lung cancer | 19208797 | CNVD |
Wilms tumour | 21544195 | CNVD |
Lung cancer | 18438408 | CNVD |
Cancer | 22429812 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
primary effusion lymphomas | 17116491 | CNVD |
Breast cancer | 16272173 | CNVD |
Breast cancer | 17133270 | CNVD |
High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Congenital anomalies of the kidney and urinary tract | 20505237 | CNVD |
Breast cancer | 17393978 | CNVD |
Testicular germ cell tumor | 18059402 | CNVD |
Ovarian cancer | 22174824 | CNVD |
Olfactory neuroblastoma | 18408657 | CNVD |
Breast cancer | 21785460 | CNVD |
Hodgkin''s lymphoma | 18641027 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
small cell lung cancer | 20016488 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Congenital diaphragmatic hernia | 21085971 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Breast cancer | 21633010 | CNVD |
Invasive pancreatic ductal carcinoma | 16982739 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Cancer | 20581869 | CNVD |
Glioblastoma multiforme | 22286061 | CNVD |
Basal cell lymphoma | 17053054 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Colorectal cancer | 16774939 | CNVD |
Esophageal squamous carcinoma | 17470683 | CNVD |
Myelofibrosis | 22110671 | CNVD |
intellectual deficit | 22127048 | CNVD |
abnormal development | 18461090 | CNVD |
Ovarian clear cell carcinoma | 21343371 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:166987000-167004800 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
2 | chr4:167003400-167007600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |