Variant report

Variant	esv8735
Chromosome Location	chr9:97812312-97812488
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97765581..97769970-chr9:97809027..97814302,8	MCF-7	breast:
2	chr9:97519868..97522673-chr9:97811342..97812928,2	K562	blood:
3	chr9:97679968..97683217-chr9:97810510..97812408,3	MCF-7	breast:
4	chr9:97763979..97769403-chr9:97805439..97812937,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148120	chromatin interactions

Extended variants
information (count: 8 )
Associated
traits (count: 72 )

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs549079993	chr9:97812339-97812340	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs4743982	chr9:97812340-97812341	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
3	rs544485053	chr9:97812405-97812406	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs574292422	chr9:97812416-97812417	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs142735442	chr9:97812450-97812451	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs371436208	chr9:97812451-97812452	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs189313053	chr9:97812471-97812472	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs541226204	chr9:97812486-97812487	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:72)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Bipolar disorder	18458673	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Biliary cancer	19435499	CNVD
small cell lung cancer	20016488	CNVD
Intracranial aneurysm	16715129	CNVD
Cardiac fibroma	18329553	CNVD
Breast cancer	17133270	CNVD
Basal cell nevus syndrome	21572526	CNVD
Mental retardation	19951919	CNVD
Retinoblastoma	22278416	CNVD
9q22.3 microdeletion syndrome	22283845	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Microcephaly	18830227	CNVD
overgrowth syndrome	16570072	CNVD
Effusion lymphoma	18079361	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97809600-97813200	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr9:97810000-97816800	Transcr. at gene 5' and 3'	A549	lung
3	chr9:97810200-97812800	Active TSS	Psoas Muscle	Psoas
4	chr9:97810200-97813000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:97810200-97813000	Active TSS	Aorta	Aorta
6	chr9:97810200-97814000	Active TSS	Stomach Smooth Muscle	stomach
7	chr9:97810400-97812400	Active TSS	Breast Myoepithelial Primary Cells	Breast
8	chr9:97810400-97812800	Active TSS	Right Atrium	heart
9	chr9:97810400-97813000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr9:97810400-97813000	Active TSS	Colon Smooth Muscle	Colon
11	chr9:97810400-97813000	Active TSS	Ovary	ovary
12	chr9:97810400-97813200	Active TSS	Duodenum Smooth Muscle	Duodenum
13	chr9:97810600-97812600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr9:97810600-97812800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr9:97810600-97813000	Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr9:97810800-97812400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr9:97810800-97812400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr9:97810800-97812800	Flanking Active TSS	HepG2	liver
19	chr9:97810800-97813200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr9:97810800-97813400	Active TSS	NHLF	lung
21	chr9:97810800-97813800	Active TSS	Esophagus	oesophagus
22	chr9:97811000-97812400	Active TSS	Stomach Mucosa	stomach
23	chr9:97811000-97813200	Transcr. at gene 5' and 3'	Osteobl	bone
24	chr9:97811000-97813400	Active TSS	HMEC	breast
25	chr9:97811200-97812800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:97811200-97813000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr9:97811200-97815200	Weak transcription	Small Intestine	intestine
28	chr9:97811400-97812400	Weak transcription	Colonic Mucosa	Colon
29	chr9:97811400-97812600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
30	chr9:97811400-97812800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr9:97811400-97812800	Weak transcription	Lung	lung
32	chr9:97811400-97813000	Active TSS	Placenta	Placenta
33	chr9:97811400-97816000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr9:97811400-97820800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr9:97811600-97812400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr9:97811600-97812600	Enhancers	Adipose Nuclei	Adipose
37	chr9:97811600-97812600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr9:97811600-97812600	Enhancers	HUVEC	blood vessel
39	chr9:97811600-97813200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr9:97811600-97816000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr9:97811600-97817600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr9:97811600-97817600	Weak transcription	Fetal Muscle Trunk	muscle
43	chr9:97811600-97817800	Weak transcription	Right Ventricle	heart
44	chr9:97811800-97812400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
45	chr9:97811800-97812400	Enhancers	GM12878-XiMat	blood
46	chr9:97811800-97812600	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr9:97811800-97812600	Enhancers	Rectal Mucosa Donor 31	rectum
48	chr9:97811800-97812800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr9:97811800-97812800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
50	chr9:97811800-97812800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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