Variant report

Variant	rs371436208
Chromosome Location	chr9:97812451-97812452
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97765581..97769970-chr9:97809027..97814302,8	MCF-7	breast:
2	chr9:97763979..97769403-chr9:97805439..97812937,10	MCF-7	breast:
3	chr9:97519868..97522673-chr9:97811342..97812928,2	K562	blood:

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
2	nsv1038106	chr9:97793038-97881416	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
3	nsv1038523	chr9:97797032-97923774	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
4	nsv540175	chr9:97797032-97923774	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
5	esv8735	chr9:97812312-97812488	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97809600-97813200	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr9:97810000-97816800	Transcr. at gene 5' and 3'	A549	lung
3	chr9:97810200-97812800	Active TSS	Psoas Muscle	Psoas
4	chr9:97810200-97813000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:97810200-97813000	Active TSS	Aorta	Aorta
6	chr9:97810200-97814000	Active TSS	Stomach Smooth Muscle	stomach
7	chr9:97810400-97812800	Active TSS	Right Atrium	heart
8	chr9:97810400-97813000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr9:97810400-97813000	Active TSS	Colon Smooth Muscle	Colon
10	chr9:97810400-97813000	Active TSS	Ovary	ovary
11	chr9:97810400-97813200	Active TSS	Duodenum Smooth Muscle	Duodenum
12	chr9:97810600-97812600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:97810600-97812800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:97810600-97813000	Active TSS	HUES6 Cell Line	embryonic stem cell
15	chr9:97810800-97812800	Flanking Active TSS	HepG2	liver
16	chr9:97810800-97813200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr9:97810800-97813400	Active TSS	NHLF	lung
18	chr9:97810800-97813800	Active TSS	Esophagus	oesophagus
19	chr9:97811000-97813200	Transcr. at gene 5' and 3'	Osteobl	bone
20	chr9:97811000-97813400	Active TSS	HMEC	breast
21	chr9:97811200-97812800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr9:97811200-97813000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr9:97811200-97815200	Weak transcription	Small Intestine	intestine
24	chr9:97811400-97812600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
25	chr9:97811400-97812800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr9:97811400-97812800	Weak transcription	Lung	lung
27	chr9:97811400-97813000	Active TSS	Placenta	Placenta
28	chr9:97811400-97816000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr9:97811400-97820800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr9:97811600-97812600	Enhancers	Adipose Nuclei	Adipose
31	chr9:97811600-97812600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr9:97811600-97812600	Enhancers	HUVEC	blood vessel
33	chr9:97811600-97813200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr9:97811600-97816000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr9:97811600-97817600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr9:97811600-97817600	Weak transcription	Fetal Muscle Trunk	muscle
37	chr9:97811600-97817800	Weak transcription	Right Ventricle	heart
38	chr9:97811800-97812600	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr9:97811800-97812600	Enhancers	Rectal Mucosa Donor 31	rectum
40	chr9:97811800-97812800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr9:97811800-97812800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
42	chr9:97811800-97812800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr9:97811800-97813000	Active TSS	Fetal Intestine Large	intestine
44	chr9:97811800-97813200	Flanking Active TSS	Rectal Smooth Muscle	rectum
45	chr9:97811800-97815200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr9:97812000-97812600	Genic enhancers	Liver	Liver
47	chr9:97812000-97812600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
48	chr9:97812000-97812600	Transcr. at gene 5' and 3'	HSMM	muscle
49	chr9:97812000-97812800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
50	chr9:97812000-97812800	Transcr. at gene 5' and 3'	NH-A	brain

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