Variant report

Variant	esv9566
Chromosome Location	chr10:42596706-42600232
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCNYL2-9	chr10:42598751-42598801	NONHSAT012853
2	lnc-CCNYL2-9	chr10:42596697-42596905	NONHSAT012853

Extended variants
information (count: 1189 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:1189 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs548929343	chr10:42596725-42596726	ZNF genes & repeats Active TSS Bivalent/Poised TSS	lncRNA	n/a	Overlapped CNVs	n/a
2	rs568668955	chr10:42596741-42596742	ZNF genes & repeats Active TSS Bivalent/Poised TSS	lncRNA	n/a	Overlapped CNVs	n/a
3	rs62649148	chr10:42596751-42596752	ZNF genes & repeats Active TSS Bivalent/Poised TSS	lncRNA	n/a	Overlapped CNVs	n/a
4	rs201330588	chr10:42596758-42596759	ZNF genes & repeats Active TSS Bivalent/Poised TSS	lncRNA	n/a	Overlapped CNVs	n/a
5	rs28973021	chr10:42596760-42596761	ZNF genes & repeats Active TSS Bivalent/Poised TSS	lncRNA	n/a	Overlapped CNVs	n/a
6	rs75092447	chr10:42596770-42596771	ZNF genes & repeats Active TSS Bivalent/Poised TSS	lncRNA	n/a	Overlapped CNVs	n/a
7	rs62649149	chr10:42596771-42596772	ZNF genes & repeats Active TSS Bivalent/Poised TSS	lncRNA	n/a	Overlapped CNVs	n/a
8	rs557599771	chr10:42596780-42596781	ZNF genes & repeats Active TSS Bivalent/Poised TSS	lncRNA	n/a	Overlapped CNVs	n/a
9	rs62649150	chr10:42596781-42596782	ZNF genes & repeats Active TSS Bivalent/Poised TSS	lncRNA	n/a	Overlapped CNVs	n/a
10	rs113135168	chr10:42596786-42596787	ZNF genes & repeats Active TSS Bivalent/Poised TSS	lncRNA	n/a	Overlapped CNVs	n/a
11	rs570813047	chr10:42596788-42596789	ZNF genes & repeats Active TSS Bivalent/Poised TSS	lncRNA	n/a	Overlapped CNVs	n/a
12	rs201355777	chr10:42596792-42596793	ZNF genes & repeats Active TSS Bivalent/Poised TSS	lncRNA	n/a	Overlapped CNVs	n/a
13	rs75619785	chr10:42596797-42596798	ZNF genes & repeats Active TSS Bivalent/Poised TSS	lncRNA	n/a	Overlapped CNVs	n/a
14	rs55905334	chr10:42596802-42596803	ZNF genes & repeats Flanking Bivalent TSS/Enh	lncRNA	n/a	Overlapped CNVs	n/a
15	rs553056097	chr10:42596804-42596805	ZNF genes & repeats Flanking Bivalent TSS/Enh	lncRNA	n/a	Overlapped CNVs	n/a
16	rs78532501	chr10:42596810-42596811	ZNF genes & repeats Flanking Bivalent TSS/Enh	lncRNA	n/a	Overlapped CNVs	n/a
17	rs74851163	chr10:42596813-42596814	ZNF genes & repeats Flanking Bivalent TSS/Enh	lncRNA	n/a	Overlapped CNVs	n/a
18	rs573221731	chr10:42596815-42596816	ZNF genes & repeats Flanking Bivalent TSS/Enh	lncRNA	n/a	Overlapped CNVs	n/a
19	rs541697683	chr10:42596819-42596820	ZNF genes & repeats Flanking Bivalent TSS/Enh	lncRNA	n/a	Overlapped CNVs	n/a
20	rs149393461	chr10:42596821-42596822	ZNF genes & repeats Flanking Bivalent TSS/Enh	lncRNA	n/a	Overlapped CNVs	n/a
21	rs144840586	chr10:42596823-42596824	ZNF genes & repeats Flanking Bivalent TSS/Enh	lncRNA	n/a	Overlapped CNVs	n/a
22	rs76073123	chr10:42596824-42596825	ZNF genes & repeats Flanking Bivalent TSS/Enh	lncRNA	n/a	Overlapped CNVs	n/a
23	rs555288121	chr10:42596825-42596826	ZNF genes & repeats Flanking Bivalent TSS/Enh	lncRNA	n/a	Overlapped CNVs	n/a
24	rs141860921	chr10:42596826-42596827	ZNF genes & repeats Flanking Bivalent TSS/Enh	lncRNA	n/a	Overlapped CNVs	n/a
25	rs575085441	chr10:42596830-42596831	ZNF genes & repeats Flanking Bivalent TSS/Enh	lncRNA	n/a	Overlapped CNVs	n/a
26	rs140063133	chr10:42596839-42596840	ZNF genes & repeats Flanking Bivalent TSS/Enh	lncRNA	n/a	Overlapped CNVs	n/a
27	rs543962339	chr10:42596841-42596842	ZNF genes & repeats Flanking Bivalent TSS/Enh	lncRNA	n/a	Overlapped CNVs	n/a
28	rs564308162	chr10:42596846-42596847	ZNF genes & repeats Flanking Bivalent TSS/Enh	lncRNA	n/a	Overlapped CNVs	n/a
29	rs78192084	chr10:42596850-42596851	ZNF genes & repeats Flanking Bivalent TSS/Enh	lncRNA	n/a	Overlapped CNVs	n/a
30	rs143716699	chr10:42596869-42596870	ZNF genes & repeats Flanking Bivalent TSS/Enh	lncRNA	n/a	Overlapped CNVs	n/a
31	rs370705794	chr10:42596873-42596874	ZNF genes & repeats Flanking Bivalent TSS/Enh	lncRNA	n/a	Overlapped CNVs	n/a
32	rs374081124	chr10:42596875-42596876	ZNF genes & repeats Flanking Bivalent TSS/Enh	lncRNA	n/a	Overlapped CNVs	n/a
33	rs146805727	chr10:42596882-42596883	ZNF genes & repeats Flanking Bivalent TSS/Enh	lncRNA	n/a	Overlapped CNVs	n/a
34	rs139922906	chr10:42596883-42596884	ZNF genes & repeats Flanking Bivalent TSS/Enh	lncRNA	n/a	Overlapped CNVs	n/a
35	rs149718859	chr10:42596884-42596885	ZNF genes & repeats Flanking Bivalent TSS/Enh	lncRNA	n/a	Overlapped CNVs	n/a
36	rs74200330	chr10:42596887-42596888	ZNF genes & repeats Flanking Bivalent TSS/Enh	lncRNA	n/a	Overlapped CNVs	n/a
37	rs145668545	chr10:42596889-42596890	ZNF genes & repeats Flanking Bivalent TSS/Enh	lncRNA	n/a	Overlapped CNVs	n/a
38	rs148899541	chr10:42596891-42596892	ZNF genes & repeats Flanking Bivalent TSS/Enh	lncRNA	n/a	Overlapped CNVs	n/a
39	rs71237699	chr10:42596892-42596893	ZNF genes & repeats Flanking Bivalent TSS/Enh	lncRNA	n/a	Overlapped CNVs	n/a
40	rs142526286	chr10:42596893-42596894	ZNF genes & repeats Flanking Bivalent TSS/Enh	lncRNA	n/a	Overlapped CNVs	n/a
41	rs74199223	chr10:42596897-42596898	ZNF genes & repeats Flanking Bivalent TSS/Enh	lncRNA	n/a	Overlapped CNVs	n/a
42	rs532854299	chr10:42596903-42596904	ZNF genes & repeats Flanking Bivalent TSS/Enh	lncRNA	n/a	Overlapped CNVs	n/a
43	rs540358731	chr10:42596904-42596905	ZNF genes & repeats Flanking Bivalent TSS/Enh	lncRNA	n/a	Overlapped CNVs	n/a
44	rs367916032	chr10:42596905-42596906	ZNF genes & repeats Flanking Bivalent TSS/Enh	lncRNA	n/a	Overlapped CNVs	n/a
45	rs71221032	chr10:42596907-42596908	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
46	rs74210869	chr10:42596908-42596909	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
47	rs79601536	chr10:42596910-42596911	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
48	rs559872522	chr10:42596911-42596912	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
49	rs528945159	chr10:42596912-42596913	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
50	rs71273292	chr10:42596914-42596915	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:157 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42596600-42596800	Active TSS	NHDF-Ad	bronchial
2	chr10:42596600-42596800	Bivalent/Poised TSS	NHLF	lung
3	chr10:42596600-42597000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:42596600-42597000	ZNF genes & repeats	Right Atrium	heart
5	chr10:42596600-42597000	ZNF genes & repeats	NHEK	skin
6	chr10:42596600-42597800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:42596600-42598000	ZNF genes & repeats	Fetal Intestine Large	intestine
8	chr10:42596600-42598600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:42596600-42598600	ZNF genes & repeats	Psoas Muscle	Psoas
10	chr10:42596600-42600200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:42596600-42600200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:42596600-42600200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
13	chr10:42596600-42600200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
14	chr10:42596600-42600200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
15	chr10:42596600-42600200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr10:42596600-42600200	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
17	chr10:42596600-42600200	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
18	chr10:42596600-42600200	ZNF genes & repeats	Aorta	Aorta
19	chr10:42596600-42600200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
20	chr10:42596600-42600200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
21	chr10:42596600-42600200	ZNF genes & repeats	Colonic Mucosa	Colon
22	chr10:42596600-42600200	ZNF genes & repeats	Colon Smooth Muscle	Colon
23	chr10:42596600-42600200	ZNF genes & repeats	Placenta	Placenta
24	chr10:42596600-42600200	ZNF genes & repeats	Fetal Stomach	stomach
25	chr10:42596600-42600200	ZNF genes & repeats	Small Intestine	intestine
26	chr10:42596600-42600200	ZNF genes & repeats	Stomach Mucosa	stomach
27	chr10:42596600-42600200	ZNF genes & repeats	Spleen	Spleen
28	chr10:42596600-42600200	ZNF genes & repeats	HSMMtube	muscle
29	chr10:42596600-42600200	ZNF genes & repeats	Osteobl	bone
30	chr10:42596600-42600400	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr10:42596600-42600400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr10:42596600-42600400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
33	chr10:42596600-42600400	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
34	chr10:42596600-42600400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
35	chr10:42596600-42600400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
36	chr10:42596600-42600400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
37	chr10:42596600-42600400	ZNF genes & repeats	Brain Anterior Caudate	brain
38	chr10:42596600-42600400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
39	chr10:42596600-42600400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
40	chr10:42596600-42600400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
41	chr10:42596600-42600400	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
42	chr10:42596600-42600400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
43	chr10:42596600-42600400	ZNF genes & repeats	GM12878-XiMat	blood
44	chr10:42596600-42600400	ZNF genes & repeats	Hela-S3	cervix
45	chr10:42596600-42600400	ZNF genes & repeats	NH-A	brain
46	chr10:42596600-42600600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
47	chr10:42596600-42600600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
48	chr10:42596600-42600600	ZNF genes & repeats	Primary B cells from cord blood	blood
49	chr10:42596600-42600600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
50	chr10:42596600-42600600	ZNF genes & repeats	Primary hematopoietic stem cells	blood

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