Variant report

Variant	rs367916032
Chromosome Location	chr10:42596905-42596906
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCNYL2-9	chr10:42596697-42596905	NONHSAT012853

Extended variants
information (count: 25 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381019	chr10:42379843-42797311	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv3327265	chr10:42383108-42800080	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv3381544	chr10:42385160-42597916	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv3353947	chr10:42396093-42662055	ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3508721	chr10:42396414-42599602	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv3508722	chr10:42396414-42599602	Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv3527791	chr10:42396830-42596972	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv3527792	chr10:42396830-42596972	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	esv3410118	chr10:42399439-42817641	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv1035511	chr10:42433540-42636467	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv1050409	chr10:42433540-42690550	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv1041974	chr10:42433540-42760904	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv1052577	chr10:42433540-42827991	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
14	nsv1036341	chr10:42433540-42853111	ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
15	nsv1036366	chr10:42433540-42853690	ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
16	esv2757380	chr10:42433540-42929116	ZNF genes & repeats Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
17	esv2759745	chr10:42433540-42929116	Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
18	nsv1044537	chr10:42463534-42635506	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
19	nsv1042307	chr10:42477859-42655660	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
20	nsv482591	chr10:42492996-42642328	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
21	nsv437669	chr10:42523670-42608040	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
22	nsv1049608	chr10:42525112-42820273	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
23	nsv550616	chr10:42533318-42667035	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
24	esv9566	chr10:42596706-42600232	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS	lncRNA	n/a	inside rSNPs	diseases
25	nsv550625	chr10:42596844-42820806	ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42596600-42597000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:42596600-42597000	ZNF genes & repeats	Right Atrium	heart
3	chr10:42596600-42597000	ZNF genes & repeats	NHEK	skin
4	chr10:42596600-42597800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:42596600-42598000	ZNF genes & repeats	Fetal Intestine Large	intestine
6	chr10:42596600-42598600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:42596600-42598600	ZNF genes & repeats	Psoas Muscle	Psoas
8	chr10:42596600-42600200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr10:42596600-42600200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:42596600-42600200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
11	chr10:42596600-42600200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
12	chr10:42596600-42600200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
13	chr10:42596600-42600200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr10:42596600-42600200	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
15	chr10:42596600-42600200	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
16	chr10:42596600-42600200	ZNF genes & repeats	Aorta	Aorta
17	chr10:42596600-42600200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
18	chr10:42596600-42600200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
19	chr10:42596600-42600200	ZNF genes & repeats	Colonic Mucosa	Colon
20	chr10:42596600-42600200	ZNF genes & repeats	Colon Smooth Muscle	Colon
21	chr10:42596600-42600200	ZNF genes & repeats	Placenta	Placenta
22	chr10:42596600-42600200	ZNF genes & repeats	Fetal Stomach	stomach
23	chr10:42596600-42600200	ZNF genes & repeats	Small Intestine	intestine
24	chr10:42596600-42600200	ZNF genes & repeats	Stomach Mucosa	stomach
25	chr10:42596600-42600200	ZNF genes & repeats	Spleen	Spleen
26	chr10:42596600-42600200	ZNF genes & repeats	HSMMtube	muscle
27	chr10:42596600-42600200	ZNF genes & repeats	Osteobl	bone
28	chr10:42596600-42600400	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr10:42596600-42600400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:42596600-42600400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
31	chr10:42596600-42600400	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
32	chr10:42596600-42600400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
33	chr10:42596600-42600400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
34	chr10:42596600-42600400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
35	chr10:42596600-42600400	ZNF genes & repeats	Brain Anterior Caudate	brain
36	chr10:42596600-42600400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
37	chr10:42596600-42600400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
38	chr10:42596600-42600400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
39	chr10:42596600-42600400	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
40	chr10:42596600-42600400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
41	chr10:42596600-42600400	ZNF genes & repeats	GM12878-XiMat	blood
42	chr10:42596600-42600400	ZNF genes & repeats	Hela-S3	cervix
43	chr10:42596600-42600400	ZNF genes & repeats	NH-A	brain
44	chr10:42596600-42600600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
45	chr10:42596600-42600600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
46	chr10:42596600-42600600	ZNF genes & repeats	Primary B cells from cord blood	blood
47	chr10:42596600-42600600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
48	chr10:42596600-42600600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
49	chr10:42596600-42600600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
50	chr10:42596600-42600600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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