Variant report

Variant	esv9720
Chromosome Location	chr6:58778435-58778633
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:74)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:74 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr17:57918618..57920889-chr6:58777178..58778919,2	MCF-7	breast:
2	chr6:58777707..58778511-chr6:61909313..61909813,2	MCF-7	breast:
3	chr17:73716896..73718915-chr6:58776651..58778729,2	MCF-7	breast:
4	chr17:66287677..66288456-chr6:58778380..58779126,2	MCF-7	breast:
5	chr6:30581365..30583375-chr6:58776545..58779152,2	MCF-7	breast:
6	chr17:79008190..79010769-chr6:58777233..58779265,2	MCF-7	breast:
7	chr1:9910788..9913768-chr6:58778329..58780695,2	MCF-7	breast:
8	chr12:7070831..7073502-chr6:58777307..58779204,2	MCF-7	breast:
9	chr6:58778414..58779270-chr7:26240803..26241518,2	Hela-S3	cervix:
10	chr6:58777712..58778738-chr6:61909295..61909815,6	MCF-7	breast:
11	chr6:27805995..27806602-chr6:58778107..58778767,2	MCF-7	breast:
12	chr6:58778243..58779030-chrX:61731310..61731811,2	MCF-7	breast:
13	chr20:52238301..52240090-chr6:58777406..58779226,2	MCF-7	breast:
14	chr17:57930610..57932922-chr6:58777438..58780644,3	MCF-7	breast:
15	chr6:58777751..58780199-chr8:128748477..128750306,2	MCF-7	breast:
16	chr13:111364963..111367929-chr6:58777252..58779728,2	MCF-7	breast:
17	chr20:62493089..62495109-chr6:58777340..58778920,2	MCF-7	breast:
18	chr6:49499719..49500373-chr6:58777827..58778441,2	MCF-7	breast:
19	chr17:57920709..57924714-chr6:58775095..58779071,5	MCF-7	breast:
20	chr6:58772384..58775379-chr6:58777406..58779060,3	K562	blood:
21	chr6:58778355..58778904-chrX:56755266..56755790,2	MCF-7	breast:
22	chr1:216349276..216351630-chr6:58776732..58778763,2	MCF-7	breast:
23	chr13:20943879..20946266-chr6:58777671..58779217,2	MCF-7	breast:
24	chr6:58776666..58779159-chr8:125462787..125464378,2	MCF-7	breast:
25	chr6:58776797..58778439-chr9:136323811..136326318,2	MCF-7	breast:
26	chr17:46984708..46987154-chr6:58777011..58778755,2	MCF-7	breast:
27	chr17:57914586..57918340-chr6:58776843..58780440,4	MCF-7	breast:
28	chr1:144533667..144534206-chr6:58778266..58778827,2	Hela-S3	cervix:
29	chr17:56707689..56709464-chr6:58776179..58779153,2	MCF-7	breast:
30	chr6:58778318..58779144-chr9:130843661..130844171,2	MCF-7	breast:
31	chr6:58776858..58779077-chr6:61908295..61909815,2	MCF-7	breast:
32	chr20:52424572..52427398-chr6:58777006..58778744,2	MCF-7	breast:
33	chr4:44422694..44424195-chr6:58776128..58778515,2	MCF-7	breast:
34	chr21:35272607..35275458-chr6:58776178..58778758,2	MCF-7	breast:
35	chr20:46129644..46132043-chr6:58777544..58779139,2	MCF-7	breast:
36	chr20:17516282..17517977-chr6:58775914..58778767,2	MCF-7	breast:
37	chr6:58775915..58778901-chr8:144691705..144693500,2	MCF-7	breast:
38	chr4:44423714..44424215-chr6:58777839..58778663,2	MCF-7	breast:
39	chr16:73430630..73432387-chr6:58777761..58779339,2	MCF-7	breast:
40	chr3:90450069..90451571-chr6:58776178..58778913,3	MCF-7	breast:
41	chr17:62622662..62623234-chr6:58778443..58779436,2	MCF-7	breast:
42	chr6:58777416..58779792-chr6:77801547..77804072,2	MCF-7	breast:
43	chr20:45984506..45987023-chr6:58776231..58780015,3	MCF-7	breast:
44	chr17:59487756..59489295-chr6:58776969..58779008,2	MCF-7	breast:
45	chr16:85495639..85498852-chr6:58775657..58778770,3	MCF-7	breast:
46	chr6:58772143..58775007-chr6:58776713..58778919,5	K562	blood:
47	chr3:63980131..63982580-chr6:58776275..58779243,2	MCF-7	breast:
48	chr6:31849956..31851616-chr6:58776203..58778751,2	MCF-7	breast:
49	chr3:16360548..16361058-chr6:58778316..58779058,2	MCF-7	breast:
50	chr18:73688396..73689210-chr6:58777841..58778684,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000122566	chromatin interactions
ENSG00000203813	chromatin interactions
ENSG00000134905	chromatin interactions
ENSG00000163635	chromatin interactions
ENSG00000171858	chromatin interactions
ENSG00000153487	chromatin interactions
ENSG00000204272	chromatin interactions
ENSG00000183665	chromatin interactions
ENSG00000159202	chromatin interactions
ENSG00000141367	chromatin interactions
ENSG00000187013	chromatin interactions
ENSG00000248278	chromatin interactions
ENSG00000226137	chromatin interactions
ENSG00000104524	chromatin interactions
ENSG00000237080	chromatin interactions
ENSG00000201699	chromatin interactions
ENSG00000112306	chromatin interactions
ENSG00000206754	chromatin interactions
ENSG00000207713	chromatin interactions
ENSG00000207708	chromatin interactions
ENSG00000268858	chromatin interactions
ENSG00000160325	chromatin interactions
ENSG00000101040	chromatin interactions
ENSG00000185650	chromatin interactions
ENSG00000111321	chromatin interactions
ENSG00000136997	chromatin interactions
ENSG00000255326	chromatin interactions
ENSG00000212195	chromatin interactions
ENSG00000124151	chromatin interactions
ENSG00000199004	chromatin interactions
ENSG00000062716	chromatin interactions
ENSG00000267280	chromatin interactions
ENSG00000132470	chromatin interactions
ENSG00000257084	chromatin interactions
ENSG00000202077	chromatin interactions
ENSG00000140553	chromatin interactions
ENSG00000126749	chromatin interactions
ENSG00000230513	chromatin interactions
ENSG00000175866	chromatin interactions
ENSG00000184436	chromatin interactions
ENSG00000184348	chromatin interactions
ENSG00000089351	chromatin interactions
ENSG00000233822	chromatin interactions
ENSG00000122565	chromatin interactions

Extended variants
information (count: 93 )
Associated
traits (count: 61 )

Variant overlapped rSNPs/rCNVs (count:93 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs56133741	chr6:58778435-58778436	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	44 gene(s)	Overlapped CNVs	n/a
2	rs4445082	chr6:58778436-58778437	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	44 gene(s)	Overlapped CNVs	n/a
3	rs542896982	chr6:58778438-58778439	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	44 gene(s)	Overlapped CNVs	n/a
4	rs4394251	chr6:58778441-58778442	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	43 gene(s)	Overlapped CNVs	n/a
5	rs11486673	chr6:58778442-58778443	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	43 gene(s)	Overlapped CNVs	n/a
6	rs60984297	chr6:58778443-58778444	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	43 gene(s)	Overlapped CNVs	n/a
7	rs56022656	chr6:58778446-58778447	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	43 gene(s)	Overlapped CNVs	n/a
8	rs56332408	chr6:58778447-58778448	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	43 gene(s)	Overlapped CNVs	n/a
9	rs544250218	chr6:58778450-58778451	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	43 gene(s)	Overlapped CNVs	n/a
10	rs4928629	chr6:58778452-58778453	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	43 gene(s)	Overlapped CNVs	n/a
11	rs9391352	chr6:58778455-58778456	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
12	rs28832075	chr6:58778457-58778458	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
13	rs28782334	chr6:58778458-58778459	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
14	rs12203870	chr6:58778467-58778468	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
15	rs9500206	chr6:58778468-58778469	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
16	rs55641722	chr6:58778469-58778470	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
17	rs4455701	chr6:58778476-58778477	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
18	rs4380778	chr6:58778480-58778481	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
19	rs6588734	chr6:58778482-58778483	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
20	rs4280994	chr6:58778483-58778484	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
21	rs56382655	chr6:58778485-58778486	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
22	rs57068346	chr6:58778487-58778488	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
23	rs563008087	chr6:58778488-58778489	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
24	rs4928630	chr6:58778489-58778490	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
25	rs56132138	chr6:58778493-58778494	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
26	rs55715802	chr6:58778494-58778495	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
27	rs9378036	chr6:58778495-58778496	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
28	rs4377813	chr6:58778496-58778497	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
29	rs4380779	chr6:58778497-58778498	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
30	rs9500575	chr6:58778501-58778502	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
31	rs55788849	chr6:58778502-58778503	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
32	rs4928631	chr6:58778505-58778506	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
33	rs66862007	chr6:58778507-58778508	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
34	rs4601158	chr6:58778512-58778513	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
35	rs28831761	chr6:58778513-58778514	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
36	rs4427027	chr6:58778514-58778515	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
37	rs9500207	chr6:58778518-58778519	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
38	rs4928633	chr6:58778519-58778520	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
39	rs66981166	chr6:58778522-58778523	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
40	rs12213487	chr6:58778524-58778525	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
41	rs67444334	chr6:58778530-58778531	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
42	rs9647644	chr6:58778531-58778532	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
43	rs28785620	chr6:58778532-58778533	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
44	rs28885831	chr6:58778534-58778535	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
45	rs9391511	chr6:58778537-58778538	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
46	rs9500208	chr6:58778540-58778541	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
47	rs28814362	chr6:58778541-58778542	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
48	rs28769029	chr6:58778546-58778547	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
49	rs55918818	chr6:58778548-58778549	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a
50	rs55740190	chr6:58778550-58778551	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	42 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:61)

Disease	PMID	Source
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Systemic lupus erythematosus	17503323	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	18458336	CNVD

Chromatin state (count:128 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:58773400-58779400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
2	chr6:58773400-58779400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:58773400-58779400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:58773400-58779400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
5	chr6:58773400-58779400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
6	chr6:58773400-58779400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
7	chr6:58773400-58779400	ZNF genes & repeats	Adipose Nuclei	Adipose
8	chr6:58773400-58779400	ZNF genes & repeats	Fetal Stomach	stomach
9	chr6:58773400-58779400	ZNF genes & repeats	Left Ventricle	heart
10	chr6:58773600-58779200	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
11	chr6:58773600-58779400	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
12	chr6:58773600-58779400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
13	chr6:58773600-58779400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
14	chr6:58773600-58779400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
15	chr6:58773600-58779400	ZNF genes & repeats	Primary B cells from cord blood	blood
16	chr6:58773600-58779400	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
17	chr6:58773600-58779400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:58773600-58779400	ZNF genes & repeats	Fetal Intestine Large	intestine
19	chr6:58776200-58779400	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:58776400-58779200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:58776400-58779400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:58776400-58779400	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
23	chr6:58776400-58779400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:58776400-58779400	Flanking Bivalent TSS/Enh	Psoas Muscle	Psoas
25	chr6:58776400-58779400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
26	chr6:58776600-58778800	Bivalent/Poised TSS	K562	blood
27	chr6:58776600-58779200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:58776600-58779200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
29	chr6:58776600-58779200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:58776600-58779200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr6:58776600-58779200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr6:58776600-58779200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr6:58776600-58779200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr6:58776600-58779200	ZNF genes & repeats	Fetal Brain Male	brain
35	chr6:58776600-58779200	ZNF genes & repeats	Fetal Brain Female	brain
36	chr6:58776600-58779200	ZNF genes & repeats	Fetal Heart	heart
37	chr6:58776600-58779200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
38	chr6:58776600-58779200	ZNF genes & repeats	Lung	lung
39	chr6:58776600-58779200	Flanking Bivalent TSS/Enh	Placenta Amnion	Placenta Amnion
40	chr6:58776600-58779200	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
41	chr6:58776600-58779200	Flanking Bivalent TSS/Enh	A549	lung
42	chr6:58776600-58779200	ZNF genes & repeats	GM12878-XiMat	blood
43	chr6:58776600-58779200	ZNF genes & repeats	HMEC	breast
44	chr6:58776600-58779200	Transcr. at gene 5' and 3'	NHEK	skin
45	chr6:58776600-58779400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
46	chr6:58776600-58779400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr6:58776600-58779400	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:58776600-58779400	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr6:58776600-58779400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr6:58776600-58779400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links