Variant report

Variant	rs4928629
Chromosome Location	chr6:58778452-58778453
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:70)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:70 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr6:58772384..58775379-chr6:58777406..58779060,3	K562	blood:
2	chr16:73430630..73432387-chr6:58777761..58779339,2	MCF-7	breast:
3	chr6:27805995..27806602-chr6:58778107..58778767,2	MCF-7	breast:
4	chr17:57918618..57920889-chr6:58777178..58778919,2	MCF-7	breast:
5	chr17:46984708..46987154-chr6:58777011..58778755,2	MCF-7	breast:
6	chr6:58776858..58779077-chr6:61908295..61909815,2	MCF-7	breast:
7	chr4:44423714..44424215-chr6:58777839..58778663,2	MCF-7	breast:
8	chr1:216349276..216351630-chr6:58776732..58778763,2	MCF-7	breast:
9	chr14:70592691..70594528-chr6:58777109..58778754,2	MCF-7	breast:
10	chr6:58777993..58779849-chr8:94211437..94213575,2	MCF-7	breast:
11	chr17:79008190..79010769-chr6:58777233..58779265,2	MCF-7	breast:
12	chr20:45984506..45987023-chr6:58776231..58780015,3	MCF-7	breast:
13	chr17:56736044..56736561-chr6:58778407..58779097,2	MCF-7	breast:
14	chr17:73716896..73718915-chr6:58776651..58778729,2	MCF-7	breast:
15	chr17:66287677..66288456-chr6:58778380..58779126,2	MCF-7	breast:
16	chr6:30581365..30583375-chr6:58776545..58779152,2	MCF-7	breast:
17	chr2:219259923..219262856-chr6:58776591..58778942,2	MCF-7	breast:
18	chr4:44422694..44424195-chr6:58776128..58778515,2	MCF-7	breast:
19	chr6:58772143..58775007-chr6:58776713..58778919,5	K562	blood:
20	chr17:57914586..57918340-chr6:58776843..58780440,4	MCF-7	breast:
21	chr20:52238301..52240090-chr6:58777406..58779226,2	MCF-7	breast:
22	chr6:58776666..58779159-chr8:125462787..125464378,2	MCF-7	breast:
23	chr12:7070831..7073502-chr6:58777307..58779204,2	MCF-7	breast:
24	chr6:58778414..58779270-chr7:26240803..26241518,2	Hela-S3	cervix:
25	chr6:58778243..58779030-chrX:61731310..61731811,2	MCF-7	breast:
26	chr17:57920709..57924714-chr6:58775095..58779071,5	MCF-7	breast:
27	chr19:35488627..35490321-chr6:58777408..58779728,2	MCF-7	breast:
28	chr17:57697051..57699517-chr6:58775454..58778452,2	MCF-7	breast:
29	chr6:58775915..58778901-chr8:144691705..144693500,2	MCF-7	breast:
30	chr6:58778318..58779144-chr9:130843661..130844171,2	MCF-7	breast:
31	chr20:19633644..19634334-chr6:58777686..58778513,2	MCF-7	breast:
32	chr20:46129644..46132043-chr6:58777544..58779139,2	MCF-7	breast:
33	chr13:111364963..111367929-chr6:58777252..58779728,2	MCF-7	breast:
34	chr17:56735441..56738187-chr6:58776197..58778735,2	MCF-7	breast:
35	chr1:146555547..146556244-chr6:58778367..58779271,2	Hela-S3	cervix:
36	chr13:20943879..20946266-chr6:58777671..58779217,2	MCF-7	breast:
37	chr20:17516282..17517977-chr6:58775914..58778767,2	MCF-7	breast:
38	chr11:58677524..58679024-chr6:58777164..58778728,2	K562	blood:
39	chr1:9910788..9913768-chr6:58778329..58780695,2	MCF-7	breast:
40	chr6:58777712..58778738-chr6:61909295..61909815,6	MCF-7	breast:
41	chr17:57930610..57932922-chr6:58777438..58780644,3	MCF-7	breast:
42	chr17:62622662..62623234-chr6:58778443..58779436,2	MCF-7	breast:
43	chr21:35272607..35275458-chr6:58776178..58778758,2	MCF-7	breast:
44	chr6:58777416..58779792-chr6:77801547..77804072,2	MCF-7	breast:
45	chr18:73688396..73689210-chr6:58777841..58778684,2	MCF-7	breast:
46	chr6:58778355..58778904-chrX:56755266..56755790,2	MCF-7	breast:
47	chr11:75291642..75294590-chr6:58777397..58779135,2	MCF-7	breast:
48	chr20:19348440..19350405-chr6:58776310..58778887,2	MCF-7	breast:
49	chr6:58777390..58779179-chr6:133135024..133136911,2	MCF-7	breast:
50	chr16:85495639..85498852-chr6:58775657..58778770,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000153487	Chromatin interaction
ENSG00000207713	Chromatin interaction
ENSG00000175866	Chromatin interaction
ENSG00000184436	Chromatin interaction
ENSG00000199004	Chromatin interaction
ENSG00000132470	Chromatin interaction
ENSG00000141367	Chromatin interaction
ENSG00000101040	Chromatin interaction
ENSG00000111321	Chromatin interaction
ENSG00000089351	Chromatin interaction
ENSG00000140553	Chromatin interaction
ENSG00000062716	Chromatin interaction
ENSG00000126749	Chromatin interaction
ENSG00000226137	Chromatin interaction
ENSG00000134905	Chromatin interaction
ENSG00000104524	Chromatin interaction
ENSG00000230513	Chromatin interaction
ENSG00000267280	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000248278	Chromatin interaction
ENSG00000171858	Chromatin interaction
ENSG00000201699	Chromatin interaction
ENSG00000257084	Chromatin interaction
ENSG00000207708	Chromatin interaction
ENSG00000159202	Chromatin interaction
ENSG00000206754	Chromatin interaction
ENSG00000112306	Chromatin interaction
ENSG00000163635	Chromatin interaction
ENSG00000183665	Chromatin interaction
ENSG00000268858	Chromatin interaction
ENSG00000136997	Chromatin interaction
ENSG00000185650	Chromatin interaction
ENSG00000122565	Chromatin interaction
ENSG00000184348	Chromatin interaction
ENSG00000204272	Chromatin interaction
ENSG00000202077	Chromatin interaction
ENSG00000187013	Chromatin interaction
ENSG00000122566	Chromatin interaction
ENSG00000255326	Chromatin interaction
ENSG00000203813	Chromatin interaction
ENSG00000233822	Chromatin interaction
ENSG00000237080	Chromatin interaction
ENSG00000124151	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:34 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv603237	chr6:58231219-58780055	Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
2	nsv427758	chr6:58502261-58780166	ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
3	nsv603243	chr6:58754939-58779628	Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
4	esv3401131	chr6:58771993-58780166	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Active TSS Strong transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
5	esv3348712	chr6:58772493-58780166	Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
6	esv3351952	chr6:58772493-58780166	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
7	esv3370259	chr6:58772493-58780166	Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
8	esv3402710	chr6:58772493-58780166	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
9	nsv821263	chr6:58773370-58780132	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
10	esv16605	chr6:58773521-58780132	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
11	esv4510	chr6:58773913-58779741	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
12	esv2440024	chr6:58773927-58778724	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	59 gene(s)	inside rSNPs	diseases
13	esv8948	chr6:58774500-58779296	Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
14	esv5877	chr6:58774642-58778682	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	59 gene(s)	inside rSNPs	diseases
15	esv8678	chr6:58775025-58778770	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	59 gene(s)	inside rSNPs	diseases
16	nsv603246	chr6:58775200-58780055	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
17	nsv603247	chr6:58775704-58778496	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	59 gene(s)	inside rSNPs	diseases
18	esv6537	chr6:58776526-58779269	Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
19	nsv603248	chr6:58776605-58780055	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
20	esv3423543	chr6:58776670-58779110	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
21	esv3507404	chr6:58776681-58779113	Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
22	esv3507405	chr6:58776681-58779113	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
23	esv14420	chr6:58776769-58780132	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Active TSS Strong transcription Weak transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
24	esv3407359	chr6:58776886-58779843	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Weak transcription Genic enhancers	Chromatin interactive region	59 gene(s)	inside rSNPs	diseases
25	nsv603249	chr6:58776961-58780055	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription	Chromatin interactive region	57 gene(s)	inside rSNPs	diseases
26	esv7997	chr6:58777134-58779324	Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS	Chromatin interactive region	57 gene(s)	inside rSNPs	diseases
27	esv3444139	chr6:58777810-58779696	Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Strong transcription Weak transcription	Chromatin interactive region	54 gene(s)	inside rSNPs	diseases
28	esv6473	chr6:58778255-58778481	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	45 gene(s)	inside rSNPs	diseases
29	esv8332	chr6:58778281-58778482	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	Chromatin interactive region	44 gene(s)	inside rSNPs	diseases
30	esv9194	chr6:58778293-58778482	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	44 gene(s)	inside rSNPs	diseases
31	esv8033	chr6:58778324-58778561	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	Chromatin interactive region	44 gene(s)	inside rSNPs	diseases
32	esv8390	chr6:58778338-58778475	ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	44 gene(s)	inside rSNPs	diseases
33	esv7563	chr6:58778405-58778579	ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	44 gene(s)	inside rSNPs	diseases
34	esv9720	chr6:58778435-58778633	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	Chromatin interactive region	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:58773400-58779400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
2	chr6:58773400-58779400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:58773400-58779400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:58773400-58779400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
5	chr6:58773400-58779400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
6	chr6:58773400-58779400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
7	chr6:58773400-58779400	ZNF genes & repeats	Adipose Nuclei	Adipose
8	chr6:58773400-58779400	ZNF genes & repeats	Fetal Stomach	stomach
9	chr6:58773400-58779400	ZNF genes & repeats	Left Ventricle	heart
10	chr6:58773600-58779200	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
11	chr6:58773600-58779400	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
12	chr6:58773600-58779400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
13	chr6:58773600-58779400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
14	chr6:58773600-58779400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
15	chr6:58773600-58779400	ZNF genes & repeats	Primary B cells from cord blood	blood
16	chr6:58773600-58779400	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
17	chr6:58773600-58779400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:58773600-58779400	ZNF genes & repeats	Fetal Intestine Large	intestine
19	chr6:58776200-58779400	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:58776400-58779200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:58776400-58779400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:58776400-58779400	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
23	chr6:58776400-58779400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:58776400-58779400	Flanking Bivalent TSS/Enh	Psoas Muscle	Psoas
25	chr6:58776400-58779400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
26	chr6:58776600-58778800	Bivalent/Poised TSS	K562	blood
27	chr6:58776600-58779200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:58776600-58779200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
29	chr6:58776600-58779200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:58776600-58779200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr6:58776600-58779200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr6:58776600-58779200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr6:58776600-58779200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr6:58776600-58779200	ZNF genes & repeats	Fetal Brain Male	brain
35	chr6:58776600-58779200	ZNF genes & repeats	Fetal Brain Female	brain
36	chr6:58776600-58779200	ZNF genes & repeats	Fetal Heart	heart
37	chr6:58776600-58779200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
38	chr6:58776600-58779200	ZNF genes & repeats	Lung	lung
39	chr6:58776600-58779200	Flanking Bivalent TSS/Enh	Placenta Amnion	Placenta Amnion
40	chr6:58776600-58779200	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
41	chr6:58776600-58779200	Flanking Bivalent TSS/Enh	A549	lung
42	chr6:58776600-58779200	ZNF genes & repeats	GM12878-XiMat	blood
43	chr6:58776600-58779200	ZNF genes & repeats	HMEC	breast
44	chr6:58776600-58779200	Transcr. at gene 5' and 3'	NHEK	skin
45	chr6:58776600-58779400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
46	chr6:58776600-58779400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr6:58776600-58779400	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:58776600-58779400	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr6:58776600-58779400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr6:58776600-58779400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell

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