Variant report

Variant	esv999906
Chromosome Location	chr6:109584769-109588060
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109572844..109579013-chr6:109586013..109590515,6	MCF-7	breast:
2	chr6:109578534..109581492-chr6:109583225..109585725,2	K562	blood:
3	chr6:109580166..109583539-chr6:109585250..109587755,3	MCF-7	breast:
4	chr6:109586422..109588540-chr6:109591361..109594071,2	MCF-7	breast:
5	chr6:109586028..109588133-chr6:109739017..109740783,2	K562	blood:
6	chr6:109586366..109589239-chr6:109589741..109593458,3	K562	blood:

Extended variants
information (count: 123 )
Associated
traits (count: 115 )

Variant overlapped rSNPs/rCNVs (count:123 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs76226461	chr6:109584782-109584783	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs141675877	chr6:109584789-109584790	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs143756739	chr6:109584817-109584818	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs34921854	chr6:109584835-109584836	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs369541194	chr6:109584860-109584861	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs183184727	chr6:109584877-109584878	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs6899616	chr6:109584885-109584886	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs553298649	chr6:109584941-109584942	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs9384702	chr6:109584988-109584989	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs545326712	chr6:109584990-109584991	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs186039131	chr6:109584996-109584997	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs575476507	chr6:109585031-109585032	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs544744396	chr6:109585085-109585086	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs190519754	chr6:109585117-109585118	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs565757019	chr6:109585203-109585204	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs76583920	chr6:109585213-109585214	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs2356726	chr6:109585228-109585229	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs552569003	chr6:109585233-109585234	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs200601198	chr6:109585240-109585241	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs532130860	chr6:109585245-109585246	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs536467542	chr6:109585255-109585256	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs71699954	chr6:109585270-109585271	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs78229736	chr6:109585276-109585277	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs372308769	chr6:109585287-109585288	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs201881391	chr6:109585289-109585290	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs375581690	chr6:109585295-109585296	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs376391549	chr6:109585296-109585297	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs68158827	chr6:109585298-109585299	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs71015581	chr6:109585318-109585319	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs569170785	chr6:109585331-109585332	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs184103240	chr6:109585400-109585401	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs548327228	chr6:109585508-109585509	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs567671127	chr6:109585542-109585543	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs188605915	chr6:109585606-109585607	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs7743328	chr6:109585611-109585612	Weak transcription Enhancers Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs4427037	chr6:109585612-109585613	Weak transcription Enhancers Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs538641895	chr6:109585616-109585617	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs558824991	chr6:109585624-109585625	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs34734001	chr6:109585642-109585643	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs397825385	chr6:109585645-109585646	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs115908257	chr6:109585657-109585658	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs192714891	chr6:109585669-109585670	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs182560376	chr6:109585700-109585701	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs574912669	chr6:109585781-109585782	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs187164094	chr6:109585834-109585835	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs560280537	chr6:109585856-109585857	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs75375558	chr6:109585858-109585859	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs545769092	chr6:109585924-109585925	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs562782741	chr6:109585947-109585948	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs949883	chr6:109585987-109585988	Weak transcription Enhancers Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:115)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Prostate cancer	18632612	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
Developmental delay	19490664	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Burkitt''s lymphoma	18698080	CNVD
Ovarian cancer	21720365	CNVD
Basal cell lymphoma	17170743	CNVD
Prostate cancer	16573809	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21785460	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16461572	CNVD
Neurocytoma	17123091	CNVD
Cancer	20164920	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Chronic lymphocytic leukemia	17805327	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Autism	17483303	CNVD
Chordoma	21602918	CNVD
Kartagener syndrome	16639409	CNVD
abnormal development	18461090	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Systemic lupus erythematosus	19220326	CNVD
Cancer	17160897	CNVD
Autism	19546859	CNVD
Schizophrenia	19546859	CNVD
Tourette syndrome	19546859	CNVD
Acute lymphoblastic leukemia	17229543	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17133270	CNVD
Follicular lymphoma	18703704	CNVD
Mental retardation	17621639	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109564000-109590400	Weak transcription	Psoas Muscle	Psoas
2	chr6:109572800-109590400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:109572800-109595200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:109573200-109589800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:109573600-109590200	Weak transcription	Gastric	stomach
6	chr6:109575800-109589200	Weak transcription	Pancreas	Pancrea
7	chr6:109581800-109588800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:109583000-109587600	Strong transcription	HepG2	liver
9	chr6:109583400-109587200	Weak transcription	Adipose Nuclei	Adipose
10	chr6:109583400-109587600	Strong transcription	Placenta	Placenta
11	chr6:109583400-109590400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:109583600-109590200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr6:109583600-109590400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr6:109583600-109591400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:109583800-109590400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:109584800-109585400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:109585000-109586600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:109585200-109586800	Enhancers	K562	blood
19	chr6:109585400-109585600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:109585400-109585800	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr6:109585600-109586600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:109585800-109587200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr6:109586600-109587600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:109587200-109587400	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr6:109587600-109590200	Weak transcription	Placenta	Placenta
26	chr6:109587600-109614600	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links