Variant report

Variant	rs949883
Chromosome Location	chr6:109585987-109585988
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109580166..109583539-chr6:109585250..109587755,3	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1008083	0.85[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1608043	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs55863350	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs61002917	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6568562	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6568565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6909900	0.91[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6924768	0.87[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73512467	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73518692	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73520752	0.81[AFR][1000 genomes]
rs73520760	0.81[AFR][1000 genomes]
rs73762681	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7743328	0.81[AFR][1000 genomes]
rs7753882	0.92[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7754671	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7762891	0.87[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7773100	0.88[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9480917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9480925	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487018	0.83[YRI][hapmap];0.84[AFR][1000 genomes]
rs9487019	0.95[YRI][hapmap]
rs9487029	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9487030	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9487031	0.95[YRI][hapmap]
rs9487035	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487044	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487045	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487050	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487056	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487059	0.95[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv999906	chr6:109584769-109588060	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109564000-109590400	Weak transcription	Psoas Muscle	Psoas
2	chr6:109572800-109590400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:109572800-109595200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:109573200-109589800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:109573600-109590200	Weak transcription	Gastric	stomach
6	chr6:109575800-109589200	Weak transcription	Pancreas	Pancrea
7	chr6:109581800-109588800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:109583000-109587600	Strong transcription	HepG2	liver
9	chr6:109583400-109587200	Weak transcription	Adipose Nuclei	Adipose
10	chr6:109583400-109587600	Strong transcription	Placenta	Placenta
11	chr6:109583400-109590400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:109583600-109590200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr6:109583600-109590400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr6:109583600-109591400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:109583800-109590400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:109585000-109586600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:109585200-109586800	Enhancers	K562	blood
18	chr6:109585600-109586600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:109585800-109587200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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