Variant report

Variant	rs9480917
Chromosome Location	chr6:109590689-109590690
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109586366..109589239-chr6:109589741..109593458,3	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1008083	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1608043	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs55863350	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs61002917	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6568562	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6568565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6909900	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6924768	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73512467	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73518692	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73520752	0.81[AFR][1000 genomes]
rs73520760	0.81[AFR][1000 genomes]
rs73762681	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7743328	0.81[AFR][1000 genomes]
rs7753882	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7754671	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7762891	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7773100	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9480925	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487018	0.84[AFR][1000 genomes]
rs9487029	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9487030	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9487035	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487044	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487045	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487050	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487056	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487059	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs949883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109572800-109595200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:109583600-109591400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:109587600-109614600	Weak transcription	HepG2	liver
4	chr6:109588800-109594200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:109589800-109591600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
6	chr6:109590200-109590800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr6:109590200-109590800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
8	chr6:109590200-109591400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
9	chr6:109590400-109590800	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
10	chr6:109590400-109591400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
11	chr6:109590400-109591400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:109590600-109590800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:109590600-109591600	Strong transcription	Placenta	Placenta
14	chr6:109590600-109592400	Weak transcription	Psoas Muscle	Psoas

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