Variant report

Variant	rs1008083
Chromosome Location	chr6:109626979-109626980
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr6:109626742-109627059	K562	blood:	n/a	n/a
2	YY1	chr6:109626842-109627019	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:109623091..109628183-chr6:109700606..109706462,9	K562	blood:
2	chr6:109555640..109560553-chr6:109624000..109628580,4	K562	blood:
3	chr6:109625539..109627045-chr6:109630480..109632036,2	K562	blood:
4	chr6:109624816..109627658-chr6:109659263..109661556,2	K562	blood:
5	chr6:109624351..109631970-chr6:109702157..109706422,11	K562	blood:
6	chr6:109626552..109629448-chr6:109691931..109694820,2	K562	blood:

No data

Variant related genes	Relation type
CCDC162P	TF binding region
ENSG00000243587	Chromatin interaction
ENSG00000135535	Chromatin interaction
ENSG00000260273	Chromatin interaction
ENSG00000203799	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1608043	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs55863350	0.89[AMR][1000 genomes]
rs61002917	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6568562	0.95[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6568565	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6909900	0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6924768	0.85[YRI][hapmap];0.89[AMR][1000 genomes]
rs73512467	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73518692	0.89[AMR][1000 genomes]
rs73762681	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7753882	0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7754671	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7762891	0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7773100	0.91[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9480917	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9480925	0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487019	0.95[YRI][hapmap]
rs9487029	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9487030	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9487031	0.95[YRI][hapmap]
rs9487035	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487044	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487045	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487050	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487056	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487059	0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs949883	0.85[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527719	chr6:109624937-109631609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109619400-109629200	Weak transcription	Gastric	stomach
2	chr6:109619400-109638000	Weak transcription	HepG2	liver
3	chr6:109621400-109629600	Enhancers	Primary hematopoietic stem cells	blood
4	chr6:109621600-109634000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:109623600-109629400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:109624000-109627000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:109624600-109631000	Enhancers	Fetal Intestine Small	intestine
8	chr6:109624800-109627400	Enhancers	Primary B cells from peripheral blood	blood
9	chr6:109624800-109628200	Enhancers	Fetal Thymus	thymus
10	chr6:109624800-109629000	Enhancers	Duodenum Mucosa	Duodenum
11	chr6:109625000-109627000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:109625000-109627000	Enhancers	Brain Substantia Nigra	brain
13	chr6:109625000-109627000	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr6:109625000-109627400	Enhancers	Primary B cells from cord blood	blood
15	chr6:109625200-109628200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:109625400-109627000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:109625600-109627200	Enhancers	Adipose Nuclei	Adipose
18	chr6:109625600-109628200	Weak transcription	Aorta	Aorta
19	chr6:109625800-109627200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:109625800-109627200	Enhancers	Brain Hippocampus Middle	brain
21	chr6:109625800-109627200	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr6:109625800-109627600	Enhancers	Brain Cingulate Gyrus	brain
23	chr6:109625800-109628400	Weak transcription	NHDF-Ad	bronchial
24	chr6:109625800-109629400	Weak transcription	HSMM	muscle
25	chr6:109625800-109634200	Weak transcription	Fetal Muscle Leg	muscle
26	chr6:109626000-109628000	Weak transcription	Hela-S3	cervix
27	chr6:109626000-109628400	Weak transcription	Colonic Mucosa	Colon
28	chr6:109626000-109629000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:109626200-109627200	Weak transcription	Left Ventricle	heart
30	chr6:109626200-109627200	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr6:109626200-109627400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr6:109626200-109627600	Weak transcription	Fetal Heart	heart
33	chr6:109626200-109628600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:109626200-109629200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr6:109626200-109629200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr6:109626200-109629200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr6:109626200-109629200	Weak transcription	Right Atrium	heart
38	chr6:109626200-109629400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr6:109626200-109629600	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr6:109626200-109631800	Weak transcription	Placenta	Placenta
41	chr6:109626200-109634200	Weak transcription	Psoas Muscle	Psoas
42	chr6:109626200-109638800	Weak transcription	Thymus	Thymus
43	chr6:109626400-109628000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:109626400-109628400	Weak transcription	Stomach Mucosa	stomach
45	chr6:109626400-109629200	Enhancers	K562	blood
46	chr6:109626600-109627000	Weak transcription	Fetal Intestine Large	intestine
47	chr6:109626600-109627000	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr6:109626600-109627400	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr6:109626800-109627000	Enhancers	Pancreas	Pancrea
50	chr6:109626800-109627400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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