Variant report

Variant	rs9487019
Chromosome Location	chr6:109586944-109586945
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109586028..109588133-chr6:109739017..109740783,2	K562	blood:
2	chr6:109580166..109583539-chr6:109585250..109587755,3	MCF-7	breast:
3	chr6:109586422..109588540-chr6:109591361..109594071,2	MCF-7	breast:
4	chr6:109572844..109579013-chr6:109586013..109590515,6	MCF-7	breast:
5	chr6:109586366..109589239-chr6:109589741..109593458,3	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1008083	0.95[YRI][hapmap]
rs10155741	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13191770	1.00[ASN][1000 genomes]
rs13196629	1.00[ASN][1000 genomes]
rs13200680	1.00[ASN][1000 genomes]
rs13219673	1.00[ASN][1000 genomes]
rs28590584	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34610724	1.00[ASN][1000 genomes]
rs35370422	1.00[ASN][1000 genomes]
rs35747587	1.00[ASN][1000 genomes]
rs35896573	1.00[ASN][1000 genomes]
rs36085386	1.00[ASN][1000 genomes]
rs41288546	0.93[EUR][1000 genomes]
rs4142466	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56882408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57465888	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57544850	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57715392	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6568562	0.95[YRI][hapmap]
rs6909900	1.00[YRI][hapmap]
rs6924768	0.83[YRI][hapmap]
rs6941690	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71558348	1.00[ASN][1000 genomes]
rs71558350	1.00[ASN][1000 genomes]
rs71558353	1.00[ASN][1000 genomes]
rs71558354	1.00[ASN][1000 genomes]
rs71558356	1.00[ASN][1000 genomes]
rs71558357	1.00[ASN][1000 genomes]
rs7742427	1.00[ASN][1000 genomes]
rs7753076	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7753882	0.95[YRI][hapmap]
rs7762891	0.91[YRI][hapmap]
rs7773100	0.95[YRI][hapmap]
rs9480925	0.95[YRI][hapmap]
rs9487021	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487031	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487059	0.95[YRI][hapmap]
rs949883	0.95[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv999906	chr6:109584769-109588060	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109564000-109590400	Weak transcription	Psoas Muscle	Psoas
2	chr6:109572800-109590400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:109572800-109595200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:109573200-109589800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:109573600-109590200	Weak transcription	Gastric	stomach
6	chr6:109575800-109589200	Weak transcription	Pancreas	Pancrea
7	chr6:109581800-109588800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:109583000-109587600	Strong transcription	HepG2	liver
9	chr6:109583400-109587200	Weak transcription	Adipose Nuclei	Adipose
10	chr6:109583400-109587600	Strong transcription	Placenta	Placenta
11	chr6:109583400-109590400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:109583600-109590200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr6:109583600-109590400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr6:109583600-109591400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:109583800-109590400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:109585800-109587200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr6:109586600-109587600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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