Variant report

Variant	rs71558348
Chromosome Location	chr6:109505331-109505332
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109497456..109500401-chr6:109504326..109505830,2	K562	blood:
2	chr6:109504328..109505857-chr6:109507220..109510008,2	K562	blood:
3	chr6:109502825..109510460-chr6:109701859..109705678,15	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260273	Chromatin interaction
ENSG00000135535	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13191770	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13196629	1.00[ASN][1000 genomes]
rs13200680	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219673	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219774	0.92[EUR][1000 genomes]
rs28590584	1.00[ASN][1000 genomes]
rs34610724	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35370422	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35747587	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35896573	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36085386	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4142466	1.00[ASN][1000 genomes]
rs56882408	1.00[ASN][1000 genomes]
rs57544850	1.00[ASN][1000 genomes]
rs71558350	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71558353	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71558354	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71558356	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71558357	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742427	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487019	1.00[ASN][1000 genomes]
rs9487021	1.00[ASN][1000 genomes]
rs9487022	1.00[ASN][1000 genomes]
rs9487031	1.00[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109502000-109506200	Enhancers	Fetal Muscle Leg	muscle
2	chr6:109503800-109505400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:109503800-109505800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:109504000-109505800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:109504000-109506000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr6:109504200-109509200	Weak transcription	Liver	Liver
7	chr6:109504200-109509200	Weak transcription	Brain Angular Gyrus	brain
8	chr6:109504200-109511200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:109504400-109505400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:109504400-109506600	Enhancers	Primary B cells from peripheral blood	blood
11	chr6:109504400-109507000	Enhancers	Primary B cells from cord blood	blood
12	chr6:109504400-109508200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr6:109504600-109505800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr6:109504600-109507000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:109504600-109508600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr6:109504600-109508800	Weak transcription	Adipose Nuclei	Adipose
17	chr6:109504800-109509200	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr6:109504800-109509400	Enhancers	Primary hematopoietic stem cells	blood
19	chr6:109505000-109511400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:109505200-109507800	Weak transcription	Stomach Mucosa	stomach

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