Variant report

Variant rs57544850
Chromosome Location chr6:109638665-109638666
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:109626200-109638800 Weak transcription Thymus Thymus
2 chr6:109627600-109639000 Weak transcription Left Ventricle heart
3 chr6:109629600-109639800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr6:109629600-109654000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr6:109634200-109641200 Enhancers Fetal Muscle Leg muscle
6 chr6:109634400-109644000 Weak transcription Spleen Spleen
7 chr6:109635200-109639800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
8 chr6:109635200-109639800 Enhancers Brain Cingulate Gyrus brain
9 chr6:109635200-109641200 Enhancers Brain Hippocampus Middle brain
10 chr6:109635600-109639400 Weak transcription K562 blood
11 chr6:109635600-109646600 Weak transcription HSMMtube muscle
12 chr6:109635800-109639000 Weak transcription Psoas Muscle Psoas
13 chr6:109635800-109639000 Weak transcription Skeletal Muscle Female skeletal muscle
14 chr6:109635800-109639200 Weak transcription Pancreas Pancrea
15 chr6:109636200-109639000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
16 chr6:109636200-109641800 Enhancers Fetal Intestine Large intestine
17 chr6:109636200-109642000 Enhancers Fetal Intestine Small intestine
18 chr6:109636400-109641200 Enhancers Brain Inferior Temporal Lobe brain
19 chr6:109636600-109639000 Enhancers Rectal Mucosa Donor 31 rectum
20 chr6:109636600-109639000 Enhancers Skeletal Muscle Male skeletal muscle
21 chr6:109636800-109639400 Enhancers Brain Anterior Caudate brain
22 chr6:109637000-109640200 Weak transcription Fetal Kidney kidney
23 chr6:109637400-109639200 Weak transcription Primary hematopoietic stem cells blood
24 chr6:109637400-109639600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
25 chr6:109637400-109649800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr6:109637800-109638800 Weak transcription Fetal Muscle Trunk muscle
27 chr6:109637800-109640600 Enhancers Liver Liver
28 chr6:109637800-109640600 Enhancers Brain Angular Gyrus brain
29 chr6:109637800-109640800 Enhancers Fetal Thymus thymus
30 chr6:109638000-109639000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
31 chr6:109638000-109639000 Enhancers Duodenum Mucosa Duodenum
32 chr6:109638000-109639200 Enhancers HepG2 liver
33 chr6:109638000-109639800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
34 chr6:109638000-109640800 Enhancers Brain Substantia Nigra brain
35 chr6:109638200-109644000 Enhancers Primary hematopoietic stem cells short term culture blood
36 chr6:109638400-109639800 Enhancers Rectal Mucosa Donor 29 rectum
37 chr6:109638400-109640600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
38 chr6:109638400-109641800 Enhancers Stomach Mucosa stomach
39 chr6:109638400-109645400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
40 chr6:109638600-109640600 Enhancers Sigmoid Colon Sigmoid Colon

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