Variant report

Variant	rs41288546
Chromosome Location	chr6:109575729-109575730
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:109573915..109575817-chr6:109614011..109616361,2	K562	blood:
2	chr6:109573548..109576150-chr6:109616367..109617967,2	MCF-7	breast:
3	chr6:109573600..109575785-chr6:109578513..109582228,5	K562	blood:
4	chr6:109571108..109577979-chr6:109701689..109707468,12	MCF-7	breast:
5	chr6:109573915..109576390-chr6:109614861..109616762,2	K562	blood:
6	chr6:109574818..109576352-chr6:109658759..109661522,2	MCF-7	breast:
7	chr6:109557258..109559203-chr6:109573548..109577382,4	K562	blood:
8	chr6:109574650..109576524-chr6:109616108..109618484,2	MCF-7	breast:
9	chr6:109572844..109579013-chr6:109586013..109590515,6	MCF-7	breast:
10	chr6:109575180..109577688-chr6:109650162..109652343,2	MCF-7	breast:
11	chr6:109572724..109576435-chr6:109701396..109704510,5	MCF-7	breast:
12	chr6:109574243..109576098-chr6:109577884..109580238,2	MCF-7	breast:
13	chr6:109572927..109577072-chr6:109577808..109581744,6	MCF-7	breast:
14	chr6:109573371..109575785-chr6:109578513..109580887,3	K562	blood:
15	chr6:109571949..109573632-chr6:109575692..109577671,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000243587	Chromatin interaction
ENSG00000260273	Chromatin interaction
ENSG00000203799	Chromatin interaction
ENSG00000135535	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10155741	0.93[EUR][1000 genomes]
rs28590584	0.93[EUR][1000 genomes]
rs4142466	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56882408	0.93[EUR][1000 genomes]
rs57465888	0.89[EUR][1000 genomes]
rs57544850	0.85[EUR][1000 genomes]
rs57715392	0.93[EUR][1000 genomes]
rs6941690	0.93[EUR][1000 genomes]
rs7753076	0.93[EUR][1000 genomes]
rs9487019	0.93[EUR][1000 genomes]
rs9487021	0.93[EUR][1000 genomes]
rs9487022	0.93[EUR][1000 genomes]
rs9487031	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527657	chr6:109533385-109579675	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109564000-109590400	Weak transcription	Psoas Muscle	Psoas
2	chr6:109572200-109578800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:109572400-109577600	Enhancers	Adipose Nuclei	Adipose
4	chr6:109572600-109577800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:109572800-109590400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:109572800-109595200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:109573200-109589800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:109573600-109577800	Weak transcription	A549	lung
9	chr6:109573600-109590200	Weak transcription	Gastric	stomach
10	chr6:109573800-109577200	Weak transcription	K562	blood
11	chr6:109574400-109577800	Weak transcription	Liver	Liver
12	chr6:109574400-109579400	Weak transcription	Fetal Intestine Large	intestine
13	chr6:109574600-109576000	Enhancers	Fetal Kidney	kidney
14	chr6:109574600-109576800	Weak transcription	Fetal Intestine Small	intestine
15	chr6:109574600-109583400	Weak transcription	Placenta	Placenta
16	chr6:109574800-109577000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr6:109574800-109578800	Weak transcription	HepG2	liver
18	chr6:109575000-109576600	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr6:109575000-109576800	Weak transcription	Stomach Mucosa	stomach
20	chr6:109575200-109582800	Weak transcription	Colon Smooth Muscle	Colon
21	chr6:109575400-109575800	Enhancers	Fetal Muscle Trunk	muscle
22	chr6:109575400-109575800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr6:109575400-109577600	Enhancers	Fetal Muscle Leg	muscle
24	chr6:109575600-109575800	Enhancers	Pancreas	Pancrea
25	chr6:109575600-109576000	Enhancers	Fetal Stomach	stomach

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