Variant report

Variant	rs9487031
Chromosome Location	chr6:109603881-109603882
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109594298..109596125-chr6:109602003..109604436,2	K562	blood:
2	chr6:109602253..109604344-chr6:109608270..109611067,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000233908	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1008083	0.95[YRI][hapmap]
rs10155741	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13191770	1.00[ASN][1000 genomes]
rs13196629	1.00[ASN][1000 genomes]
rs13200680	1.00[ASN][1000 genomes]
rs13219673	1.00[ASN][1000 genomes]
rs28590584	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34610724	1.00[ASN][1000 genomes]
rs35370422	1.00[ASN][1000 genomes]
rs35747587	1.00[ASN][1000 genomes]
rs35896573	1.00[ASN][1000 genomes]
rs36085386	1.00[ASN][1000 genomes]
rs41288546	0.93[EUR][1000 genomes]
rs4142466	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56882408	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57465888	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57544850	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57715392	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6568562	0.95[YRI][hapmap]
rs6909900	1.00[YRI][hapmap]
rs6924768	0.83[YRI][hapmap]
rs6941690	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71558348	1.00[ASN][1000 genomes]
rs71558350	1.00[ASN][1000 genomes]
rs71558353	1.00[ASN][1000 genomes]
rs71558354	1.00[ASN][1000 genomes]
rs71558356	1.00[ASN][1000 genomes]
rs71558357	1.00[ASN][1000 genomes]
rs7742427	1.00[ASN][1000 genomes]
rs7753076	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7753882	0.95[YRI][hapmap]
rs7762891	0.91[YRI][hapmap]
rs7773100	0.95[YRI][hapmap]
rs9480925	0.95[YRI][hapmap]
rs9487019	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487021	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487022	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487059	0.95[YRI][hapmap]
rs949883	0.95[YRI][hapmap]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109587600-109614600	Weak transcription	HepG2	liver
2	chr6:109591600-109615200	Weak transcription	Placenta	Placenta
3	chr6:109603400-109606200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:109603800-109604000	Enhancers	K562	blood
5	chr6:109603800-109605000	Enhancers	Monocytes-CD14+_RO01746	blood

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