Variant report

Variant	rs71558356
Chromosome Location	chr6:109546111-109546112
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109545507..109547135-chr6:109557323..109558831,2	MCF-7	breast:
2	chr6:109545979..109548369-chr6:109549835..109551371,2	K562	blood:
3	chr6:109545314..109548314-chr6:109702078..109706813,4	MCF-7	breast:
4	chr6:109545348..109547132-chr6:109572253..109575159,2	MCF-7	breast:
5	chr6:109544463..109546342-chr6:109549424..109551037,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000243587	Chromatin interaction
ENSG00000135535	Chromatin interaction
ENSG00000260273	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13191770	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13196629	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13200680	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219673	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219774	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28590584	1.00[ASN][1000 genomes]
rs34610724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35370422	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35747587	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35896573	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36085386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4142466	1.00[ASN][1000 genomes]
rs56882408	1.00[ASN][1000 genomes]
rs57544850	1.00[ASN][1000 genomes]
rs71558348	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71558350	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71558353	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71558354	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71558357	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742427	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487019	1.00[ASN][1000 genomes]
rs9487021	1.00[ASN][1000 genomes]
rs9487022	1.00[ASN][1000 genomes]
rs9487031	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527657	chr6:109533385-109579675	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109536000-109550800	Weak transcription	HSMMtube	muscle
2	chr6:109542400-109547800	Weak transcription	Stomach Mucosa	stomach
3	chr6:109544200-109546800	Weak transcription	Aorta	Aorta
4	chr6:109544800-109547200	Enhancers	Psoas Muscle	Psoas
5	chr6:109545000-109546400	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr6:109545000-109546600	Enhancers	Primary T cells from cord blood	blood
7	chr6:109545400-109546200	Enhancers	Fetal Thymus	thymus
8	chr6:109545400-109546200	Enhancers	Thymus	Thymus
9	chr6:109545400-109546600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr6:109545600-109546400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
11	chr6:109545600-109546600	Weak transcription	Spleen	Spleen
12	chr6:109545600-109547000	Enhancers	Fetal Muscle Leg	muscle

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