Variant report

Variant	rs36085386
Chromosome Location	chr6:109544385-109544386
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109542960..109544899-chr6:109700564..109702558,2	K562	blood:
2	chr6:109537846..109539361-chr6:109541996..109544593,2	MCF-7	breast:
3	chr6:109542871..109545801-chr6:109546672..109548924,2	K562	blood:
4	chr6:109541946..109544521-chr6:109546672..109551149,4	K562	blood:
5	chr6:109544188..109545945-chr6:109546253..109548753,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135535	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13191770	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13196629	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13200680	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219673	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219774	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28590584	1.00[ASN][1000 genomes]
rs34610724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35370422	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35747587	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35896573	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4142466	1.00[ASN][1000 genomes]
rs56882408	1.00[ASN][1000 genomes]
rs57544850	1.00[ASN][1000 genomes]
rs71558348	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71558350	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71558353	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71558354	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71558356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71558357	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742427	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487019	1.00[ASN][1000 genomes]
rs9487021	1.00[ASN][1000 genomes]
rs9487022	1.00[ASN][1000 genomes]
rs9487031	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527657	chr6:109533385-109579675	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109517200-109544800	Weak transcription	Psoas Muscle	Psoas
2	chr6:109535200-109545800	Weak transcription	Right Atrium	heart
3	chr6:109536000-109550800	Weak transcription	HSMMtube	muscle
4	chr6:109542000-109545400	Weak transcription	Fetal Thymus	thymus
5	chr6:109542400-109547800	Weak transcription	Stomach Mucosa	stomach
6	chr6:109544000-109544600	Enhancers	Primary T cells from cord blood	blood
7	chr6:109544000-109544800	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr6:109544200-109544800	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr6:109544200-109546800	Weak transcription	Aorta	Aorta

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