Variant report

Variant	rs7742427
Chromosome Location	chr6:109551749-109551750
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109550138..109552372-chr6:109553343..109555002,4	K562	blood:
2	chr6:109551268..109553358-chr6:109702107..109704449,3	MCF-7	breast:
3	chr6:109540365..109541888-chr6:109549940..109552681,2	MCF-7	breast:
4	chr6:109550969..109552801-chr6:109556647..109559648,3	K562	blood:
5	chr6:109549799..109552597-chr6:109768682..109770308,2	K562	blood:
6	chr6:109551005..109552801-chr6:109556647..109559634,2	K562	blood:
7	chr6:109515007..109517664-chr6:109549539..109552383,3	MCF-7	breast:
8	chr6:109550909..109553791-chr6:109560961..109563998,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13191770	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13196629	1.00[ASN][1000 genomes]
rs13200680	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219673	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219774	0.84[EUR][1000 genomes]
rs28590584	1.00[ASN][1000 genomes]
rs34610724	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35370422	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35747587	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35896573	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36085386	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4142466	1.00[ASN][1000 genomes]
rs56882408	1.00[ASN][1000 genomes]
rs57544850	1.00[ASN][1000 genomes]
rs71558348	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71558350	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71558353	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71558354	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71558356	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71558357	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487019	1.00[ASN][1000 genomes]
rs9487021	1.00[ASN][1000 genomes]
rs9487022	1.00[ASN][1000 genomes]
rs9487031	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527657	chr6:109533385-109579675	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109546800-109557800	Weak transcription	Spleen	Spleen
2	chr6:109547000-109553200	Enhancers	Fetal Intestine Small	intestine
3	chr6:109547800-109553000	Enhancers	Stomach Mucosa	stomach
4	chr6:109550000-109551800	Enhancers	Placenta	Placenta
5	chr6:109550000-109553000	Enhancers	Rectal Mucosa Donor 29	rectum
6	chr6:109550000-109553600	Enhancers	Duodenum Mucosa	Duodenum
7	chr6:109550000-109553600	Enhancers	Fetal Intestine Large	intestine
8	chr6:109550200-109553600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:109551000-109552200	Enhancers	Adipose Nuclei	Adipose
10	chr6:109551000-109552200	Enhancers	HepG2	liver
11	chr6:109551200-109552400	Enhancers	Colonic Mucosa	Colon
12	chr6:109551200-109553000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:109551200-109557800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr6:109551400-109552000	Weak transcription	Pancreas	Pancrea
15	chr6:109551400-109552000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr6:109551400-109553800	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr6:109551400-109557400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:109551600-109553200	Weak transcription	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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