Variant report

Variant	rs71558357
Chromosome Location	chr6:109559369-109559370
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109556893..109560362-chr6:109702019..109704753,3	K562	blood:
2	chr6:109555640..109560553-chr6:109624000..109628580,4	K562	blood:
3	chr6:109554938..109560362-chr6:109702019..109707132,8	K562	blood:

Variant related genes	Relation type
ENSG00000135535	Chromatin interaction
ENSG00000260273	Chromatin interaction
ENSG00000201023	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13191770	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13196629	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13200680	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219673	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28590584	1.00[ASN][1000 genomes]
rs34610724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35370422	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35747587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35896573	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36085386	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4142466	1.00[ASN][1000 genomes]
rs56882408	1.00[ASN][1000 genomes]
rs57544850	1.00[ASN][1000 genomes]
rs71558348	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71558350	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71558353	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71558354	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71558356	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742427	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487019	1.00[ASN][1000 genomes]
rs9487021	1.00[ASN][1000 genomes]
rs9487022	1.00[ASN][1000 genomes]
rs9487031	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527657	chr6:109533385-109579675	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109556800-109562800	Enhancers	Primary hematopoietic stem cells	blood
2	chr6:109556800-109564200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:109557000-109560600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:109557200-109562000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:109557200-109565000	Enhancers	NHDF-Ad	bronchial
6	chr6:109557400-109559400	Flanking Active TSS	K562	blood
7	chr6:109557400-109562000	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr6:109557400-109562200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:109557600-109559400	Enhancers	Lung	lung
10	chr6:109557600-109559600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr6:109557600-109562000	Enhancers	Stomach Mucosa	stomach
12	chr6:109557600-109565200	Enhancers	Hela-S3	cervix
13	chr6:109557800-109559400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
14	chr6:109557800-109559400	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr6:109557800-109559400	Enhancers	Spleen	Spleen
16	chr6:109558000-109559400	Enhancers	Primary T cells from cord blood	blood
17	chr6:109558000-109560000	Weak transcription	Right Atrium	heart
18	chr6:109558000-109560200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr6:109558000-109562000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr6:109558200-109559400	Enhancers	HUVEC	blood vessel
21	chr6:109558200-109559800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr6:109558200-109560000	Weak transcription	Brain Substantia Nigra	brain
23	chr6:109558200-109560400	Weak transcription	Brain Hippocampus Middle	brain
24	chr6:109558200-109560400	Weak transcription	Fetal Intestine Large	intestine
25	chr6:109558200-109565000	Enhancers	Muscle Satellite Cultured Cells	--
26	chr6:109558200-109565200	Enhancers	Osteobl	bone
27	chr6:109558200-109572200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr6:109558400-109559400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
29	chr6:109558400-109560200	Weak transcription	HepG2	liver
30	chr6:109558400-109560400	Weak transcription	Fetal Intestine Small	intestine
31	chr6:109558400-109560400	Weak transcription	Fetal Muscle Leg	muscle
32	chr6:109558400-109561400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:109558600-109559600	Weak transcription	Adipose Nuclei	Adipose
34	chr6:109558600-109560000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr6:109558600-109561800	Weak transcription	HSMMtube	muscle
36	chr6:109558600-109562800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr6:109558800-109559400	Enhancers	Placenta	Placenta
38	chr6:109558800-109566400	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr6:109559000-109560000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr6:109559000-109560400	Weak transcription	HSMM	muscle
41	chr6:109559000-109563400	Enhancers	Primary B cells from cord blood	blood
42	chr6:109559000-109564000	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr6:109559000-109564200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr6:109559200-109559400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr6:109559200-109559400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr6:109559200-109559400	Enhancers	Fetal Muscle Trunk	muscle
47	chr6:109559200-109560400	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr6:109559200-109561600	Weak transcription	Fetal Thymus	thymus
49	chr6:109559200-109564200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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