Variant report

Variant	rs13219774
Chromosome Location	chr6:109564226-109564227
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:109559579..109562142-chr6:109563967..109566714,2	MCF-7	breast:
2	chr6:109562851..109564633-chr6:109619048..109621564,2	K562	blood:
3	chr6:109556115..109561938-chr6:109562255..109566147,11	K562	blood:
4	chr6:109563176..109564887-chr6:109702554..109704695,2	MCF-7	breast:
5	chr6:109563245..109565311-chr6:109702150..109704774,2	MCF-7	breast:
6	chr6:109561439..109564870-chr6:109795296..109799146,3	K562	blood:
7	chr6:109510027..109511662-chr6:109562928..109565224,2	MCF-7	breast:
8	chr6:109562155..109565260-chr6:109572597..109575584,3	K562	blood:
9	chr6:109556549..109561888-chr6:109562046..109565480,11	K562	blood:

No data

Variant related genes	Relation type
ENSG00000260273	Chromatin interaction
ENSG00000243587	Chromatin interaction
ENSG00000135535	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13190802	1.00[ASN][1000 genomes]
rs13191770	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13196629	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13200680	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13209450	1.00[ASN][1000 genomes]
rs13219673	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34599673	1.00[ASN][1000 genomes]
rs34610724	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35370422	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35747587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35896573	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36052053	1.00[ASN][1000 genomes]
rs36085386	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71558348	0.92[EUR][1000 genomes]
rs71558350	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71558353	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71558354	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71558356	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71558357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71558360	1.00[ASN][1000 genomes]
rs7742427	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527657	chr6:109533385-109579675	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109557200-109565000	Enhancers	NHDF-Ad	bronchial
2	chr6:109557600-109565200	Enhancers	Hela-S3	cervix
3	chr6:109558200-109565000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:109558200-109565200	Enhancers	Osteobl	bone
5	chr6:109558200-109572200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:109558800-109566400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:109561600-109566200	Enhancers	K562	blood
8	chr6:109562000-109572400	Weak transcription	Placenta	Placenta
9	chr6:109562200-109564800	Weak transcription	Fetal Muscle Leg	muscle
10	chr6:109562600-109564800	Weak transcription	Adipose Nuclei	Adipose
11	chr6:109562600-109565000	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr6:109562800-109565200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:109563200-109565000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:109563400-109564800	Weak transcription	Primary B cells from cord blood	blood
15	chr6:109563600-109564800	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr6:109563600-109565000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr6:109563600-109565000	Weak transcription	HepG2	liver
18	chr6:109564000-109565200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:109564000-109590400	Weak transcription	Psoas Muscle	Psoas
20	chr6:109564200-109564600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:109564200-109564600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:109564200-109564600	Weak transcription	HSMM	muscle
23	chr6:109564200-109572600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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