Variant report

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:109571949..109573632-chr6:109575692..109577671,2	K562	blood:
2	chr6:109562155..109565260-chr6:109572597..109575584,3	K562	blood:
3	chr6:109572074..109573925-chr6:109578773..109580285,2	MCF-7	breast:
4	chr6:109571576..109573317-chr6:109615382..109618742,3	MCF-7	breast:
5	chr6:109571108..109577979-chr6:109701689..109707468,12	MCF-7	breast:
6	chr6:109571834..109573964-chr6:109613756..109616504,2	MCF-7	breast:
7	chr6:109556632..109559004-chr6:109572624..109575061,2	K562	blood:
8	chr6:109572844..109579013-chr6:109586013..109590515,6	MCF-7	breast:
9	chr6:109545348..109547132-chr6:109572253..109575159,2	MCF-7	breast:
10	chr20:52270865..52273863-chr6:109572991..109575305,2	MCF-7	breast:
11	chr6:109572724..109576435-chr6:109701396..109704510,5	MCF-7	breast:
12	chr6:109572927..109577072-chr6:109577808..109581744,6	MCF-7	breast:
13	chr6:109571423..109573781-chr6:109659713..109661931,2	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13190802	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13199388	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13203020	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13205489	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13209450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219774	1.00[ASN][1000 genomes]
rs13220206	0.92[EUR][1000 genomes]
rs1812230	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28360564	0.92[EUR][1000 genomes]
rs34352435	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34684377	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34739891	0.92[EUR][1000 genomes]
rs34780834	0.92[EUR][1000 genomes]
rs34854922	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34949378	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs36052053	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36094641	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71558360	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71558361	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71558363	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71558364	0.92[EUR][1000 genomes]
rs932222	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527657	chr6:109533385-109579675	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109564000-109590400	Weak transcription	Psoas Muscle	Psoas
2	chr6:109572000-109573200	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr6:109572200-109578800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:109572400-109573200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:109572400-109577600	Enhancers	Adipose Nuclei	Adipose
6	chr6:109572600-109573200	Flanking Active TSS	HepG2	liver
7	chr6:109572600-109573800	Enhancers	K562	blood
8	chr6:109572600-109574200	Enhancers	Ovary	ovary
9	chr6:109572600-109574400	Enhancers	Liver	Liver
10	chr6:109572600-109577800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:109572800-109573400	Flanking Active TSS	A549	lung
12	chr6:109572800-109573600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
13	chr6:109572800-109574000	Weak transcription	Fetal Intestine Small	intestine
14	chr6:109572800-109574000	Weak transcription	Placenta	Placenta
15	chr6:109572800-109575000	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr6:109572800-109590400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr6:109572800-109595200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:109573000-109573200	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr6:109573000-109574000	Weak transcription	Rectal Mucosa Donor 29	rectum

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