Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109578534..109581492-chr6:109583225..109585725,2	K562	blood:
2	chr6:109577168..109578931-chr6:109582878..109584392,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13190802	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13203020	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13205489	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13209450	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13220206	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1812230	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28360564	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34352435	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34599673	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34684377	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34739891	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34780834	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34854922	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34949378	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36052053	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36094641	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71558360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71558361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71558363	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71558364	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs932222	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109564000-109590400	Weak transcription	Psoas Muscle	Psoas
2	chr6:109572800-109590400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:109572800-109595200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:109573200-109589800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:109573600-109590200	Weak transcription	Gastric	stomach
6	chr6:109575800-109589200	Weak transcription	Pancreas	Pancrea
7	chr6:109579600-109584200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:109581800-109588800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:109583000-109587600	Strong transcription	HepG2	liver
10	chr6:109583400-109587200	Weak transcription	Adipose Nuclei	Adipose
11	chr6:109583400-109587600	Strong transcription	Placenta	Placenta
12	chr6:109583400-109590400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:109583600-109590200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr6:109583600-109590400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr6:109583600-109591400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:109583800-109590400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

Quick Search: