Variant report

Variant	rs71558363
Chromosome Location	chr6:109604981-109604982
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109604174..109607113-chr6:109618128..109619634,2	MCF-7	breast:
2	chr6:109604152..109606208-chr6:109703363..109705776,2	K562	blood:
3	chr6:109604925..109606783-chr6:109700992..109703357,2	K562	blood:
4	chr6:109596645..109598762-chr6:109604228..109605955,2	K562	blood:
5	chr6:109604413..109609020-chr6:109610779..109613527,4	K562	blood:
6	chr6:109604277..109607787-chr6:109628110..109631936,3	K562	blood:

Variant related genes	Relation type
ENSG00000260273	Chromatin interaction
ENSG00000135535	Chromatin interaction
ENSG00000219700	Chromatin interaction
ENSG00000238474	Chromatin interaction
ENSG00000203799	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13190802	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13199388	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13203020	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13205489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13209450	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13220206	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1812230	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28360564	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34352435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34599673	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34684377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34739891	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34780834	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34854922	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34949378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36052053	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs36094641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56150455	1.00[ASN][1000 genomes]
rs61734155	1.00[ASN][1000 genomes]
rs71558360	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71558361	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71558364	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs932222	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109587600-109614600	Weak transcription	HepG2	liver
2	chr6:109591600-109615200	Weak transcription	Placenta	Placenta
3	chr6:109603400-109606200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:109603800-109605000	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr6:109604200-109605200	Weak transcription	K562	blood

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