Variant report

Variant	rs61734155
Chromosome Location	chr6:109636531-109636532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109631513..109637347-chr6:109638223..109642715,6	K562	blood:
2	chr6:109635254..109638120-chr6:109702756..109704791,3	MCF-7	breast:
3	chr6:109627945..109629933-chr6:109634086..109636945,2	MCF-7	breast:
4	chr6:109635700..109637262-chr6:109660535..109662631,2	K562	blood:
5	chr6:109625245..109626774-chr6:109636404..109638481,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000201023	Chromatin interaction
ENSG00000260273	Chromatin interaction
ENSG00000135535	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13205489	1.00[ASN][1000 genomes]
rs13220206	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1812230	1.00[ASN][1000 genomes]
rs28360564	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34352435	1.00[ASN][1000 genomes]
rs34684377	1.00[ASN][1000 genomes]
rs34739891	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34780834	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34854922	1.00[ASN][1000 genomes]
rs34949378	1.00[ASN][1000 genomes]
rs36094641	1.00[ASN][1000 genomes]
rs56150455	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71558363	1.00[ASN][1000 genomes]
rs71558364	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs932222	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5435	chr6:109633035-109669127	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109619400-109638000	Weak transcription	HepG2	liver
2	chr6:109626200-109638800	Weak transcription	Thymus	Thymus
3	chr6:109627600-109639000	Weak transcription	Left Ventricle	heart
4	chr6:109629600-109639800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:109629600-109654000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:109634200-109641200	Enhancers	Fetal Muscle Leg	muscle
7	chr6:109634400-109636800	Enhancers	Brain Substantia Nigra	brain
8	chr6:109634400-109644000	Weak transcription	Spleen	Spleen
9	chr6:109634600-109637000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:109634800-109636600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:109635200-109639800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:109635200-109639800	Enhancers	Brain Cingulate Gyrus	brain
13	chr6:109635200-109641200	Enhancers	Brain Hippocampus Middle	brain
14	chr6:109635400-109637000	Enhancers	Brain Angular Gyrus	brain
15	chr6:109635600-109636600	Weak transcription	Brain Germinal Matrix	brain
16	chr6:109635600-109637800	Weak transcription	Liver	Liver
17	chr6:109635600-109639400	Weak transcription	K562	blood
18	chr6:109635600-109646600	Weak transcription	HSMMtube	muscle
19	chr6:109635800-109639000	Weak transcription	Psoas Muscle	Psoas
20	chr6:109635800-109639000	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr6:109635800-109639200	Weak transcription	Pancreas	Pancrea
22	chr6:109636200-109636600	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr6:109636200-109637200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:109636200-109637400	Enhancers	Primary hematopoietic stem cells	blood
25	chr6:109636200-109637400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr6:109636200-109639000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:109636200-109641800	Enhancers	Fetal Intestine Large	intestine
28	chr6:109636200-109642000	Enhancers	Fetal Intestine Small	intestine
29	chr6:109636400-109636800	Weak transcription	Fetal Muscle Trunk	muscle
30	chr6:109636400-109641200	Enhancers	Brain Inferior Temporal Lobe	brain

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