Variant report

Variant	nsv5435
Chromosome Location	chr6:109633035-109669127
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:270)
CpG islands
(count:0)
Chromatin interactive
region (count:64)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:270 , 50 per page) page: 1 2 3 4 5 6

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:109639449-109639868	HepG2	liver:	n/a	chr6:109639600-109639616
2	ARID3A	chr6:109661341-109662200	K562	blood:	n/a	n/a
3	ATF1	chr6:109661358-109661845	K562	blood:	n/a	n/a
4	ATF3	chr6:109657478-109657812	K562	blood:	n/a	n/a
5	BACH1	chr6:109661663-109661780	K562	blood:	n/a	n/a
6	BHLHE40	chr6:109648844-109649190	K562	blood:	n/a	chr6:109649138-109649151
7	BHLHE40	chr6:109654076-109654225	GM12878	blood:	n/a	n/a
8	BHLHE40	chr6:109648909-109648912	GM12878	blood:	n/a	n/a
9	BHLHE40	chr6:109653905-109654341	HepG2	liver:	n/a	n/a
10	BHLHE40	chr6:109661378-109661904	K562	blood:	n/a	n/a
11	BHLHE40	chr6:109663799-109663961	K562	blood:	n/a	n/a
12	BHLHE40	chr6:109658416-109658418	K562	blood:	n/a	n/a
13	CBX3	chr6:109663683-109664048	K562	blood:	n/a	n/a
14	CBX3	chr6:109643987-109644510	K562	blood:	n/a	n/a
15	CBX3	chr6:109661401-109661883	K562	blood:	n/a	n/a
16	CBX3	chr6:109654927-109655438	K562	blood:	n/a	n/a
17	CBX3	chr6:109644545-109644944	K562	blood:	n/a	n/a
18	CCNT2	chr6:109664053-109664207	K562	blood:	n/a	n/a
19	CCNT2	chr6:109661498-109661721	K562	blood:	n/a	n/a
20	CEBPB	chr6:109665306-109665858	MCF-7	breast:	n/a	n/a
21	CEBPB	chr6:109657507-109657850	K562	blood:	n/a	chr6:109657679-109657690
22	CEBPB	chr6:109661378-109661843	K562	blood:	n/a	n/a
23	CEBPB	chr6:109665310-109665815	MCF-7	breast:	n/a	n/a
24	CEBPB	chr6:109657493-109657871	Hela-S3	cervix:	n/a	chr6:109657679-109657690
25	CEBPB	chr6:109657492-109657866	IMR90	lung:	n/a	chr6:109657679-109657690
26	CEBPB	chr6:109657501-109658354	HepG2	liver:	n/a	chr6:109657880-109657888 chr6:109657679-109657690
27	CEBPB	chr6:109658169-109658306	Hela-S3	cervix:	n/a	n/a
28	CEBPB	chr6:109655475-109655616	A549	lung:	n/a	n/a
29	CEBPB	chr6:109657478-109657834	K562	blood:	n/a	chr6:109657679-109657690
30	CEBPB	chr6:109661315-109661760	K562	blood:	n/a	n/a
31	CEBPB	chr6:109657457-109658421	MCF-7	breast:	n/a	chr6:109657880-109657888 chr6:109657679-109657690
32	CEBPB	chr6:109657539-109657826	H1-hESC	embryonic stem cell:	n/a	chr6:109657679-109657690
33	CEBPB	chr6:109657497-109658304	A549	lung:	n/a	chr6:109657880-109657888 chr6:109657679-109657690
34	CEBPD	chr6:109641373-109641770	K562	blood:	n/a	n/a
35	CHD2	chr6:109663840-109664200	K562	blood:	n/a	n/a
36	CHD2	chr6:109657624-109657729	Hela-S3	cervix:	n/a	n/a
37	CHD2	chr6:109640006-109640083	HepG2	liver:	n/a	n/a
38	CTCF	chr6:109653819-109653885	Hela-S3	cervix:	n/a	chr6:109653826-109653844
39	CTCF	chr6:109653812-109653918	MCF-7	breast:	n/a	chr6:109653826-109653844
40	CTCF	chr6:109653825-109653912	H1-hESC	embryonic stem cell:	n/a	chr6:109653826-109653844
41	CTCF	chr6:109653778-109653924	MCF-7	breast:	n/a	chr6:109653826-109653844
42	CTCF	chr6:109638959-109639004	GM20000	blood:	n/a	n/a
43	CTCF	chr6:109653789-109653795	HepG2	liver:	n/a	n/a
44	CTCF	chr6:109653819-109653911	MCF-7	breast:	n/a	chr6:109653826-109653844
45	CTCF	chr6:109653860-109654010	GM12868	blood:	n/a	n/a
46	CTCF	chr6:109657880-109658030	SAEC	small airway:	n/a	chr6:109657925-109657932
47	CTCF	chr6:109653773-109653927	MCF-7	breast:	n/a	chr6:109653826-109653844
48	CTCF	chr6:109653760-109653910	HepG2	liver:	n/a	chr6:109653826-109653844
49	CTCF	chr6:109651931-109652002	GM10248	blood:	n/a	n/a
50	CTCF	chr6:109644160-109644310	GM12873	blood:	n/a	n/a

No data

(count:64 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr6:109571423..109573781-chr6:109659713..109661931,2	MCF-7	breast:
2	chr6:109633494..109635331-chr6:109638661..109641514,2	MCF-7	breast:
3	chr6:109667528..109670285-chr6:109670801..109673728,2	K562	blood:
4	chr6:109641011..109643072-chr6:109645120..109647555,2	K562	blood:
5	chr6:109656578..109659405-chr6:109702174..109705135,3	MCF-7	breast:
6	chr6:109635254..109638120-chr6:109702756..109704791,3	MCF-7	breast:
7	chr6:109660483..109663037-chr6:109663413..109665260,2	K562	blood:
8	chr6:109631513..109637347-chr6:109638223..109642715,6	K562	blood:
9	chr6:109640571..109644823-chr6:109646386..109650384,4	MCF-7	breast:
10	chr6:109641011..109643072-chr6:109645120..109647555,2	K562	blood:
11	chr6:109665909..109668467-chr6:109668999..109670640,2	MCF-7	breast:
12	chr6:109638384..109640553-chr6:109645179..109647068,2	K562	blood:
13	chr6:109629382..109632123-chr6:109644034..109645536,2	MCF-7	breast:
14	chr6:109633494..109635331-chr6:109638661..109641514,2	MCF-7	breast:
15	chr6:109615706..109617299-chr6:109661071..109663820,2	MCF-7	breast:
16	chr6:109654487..109657351-chr6:109665508..109668370,2	K562	blood:
17	chr6:109629394..109632437-chr6:109632467..109635413,3	K562	blood:
18	chr6:109652928..109655072-chr6:109655937..109657890,2	MCF-7	breast:
19	chr6:109627149..109629191-chr6:109642784..109645963,3	K562	blood:
20	chr6:109668456..109674736-chr6:109696300..109702886,9	K562	blood:
21	chr6:109661580..109663132-chr6:109665605..109668214,2	MCF-7	breast:
22	chr6:109656032..109659893-chr6:109659967..109664099,6	MCF-7	breast:
23	chr6:109656306..109660874-chr6:109662231..109666521,7	MCF-7	breast:
24	chr6:109665458..109673633-chr6:109699710..109704931,12	MCF-7	breast:
25	chr6:109655737..109658352-chr6:109659760..109662191,3	K562	blood:
26	chr6:109629710..109632603-chr6:109666871..109669752,2	K562	blood:
27	chr6:109656306..109660874-chr6:109662231..109666521,7	MCF-7	breast:
28	chr6:109652681..109655937-chr6:109701274..109703936,3	MCF-7	breast:
29	chr6:109625245..109626774-chr6:109636404..109638481,2	MCF-7	breast:
30	chr6:109668992..109672376-chr6:109675520..109680148,6	K562	blood:
31	chr6:109627945..109629933-chr6:109634086..109636945,2	MCF-7	breast:
32	chr6:109651102..109653530-chr6:109656449..109659654,3	MCF-7	breast:
33	chr6:109661580..109663132-chr6:109665605..109668214,2	MCF-7	breast:
34	chr6:109609462..109612030-chr6:109655283..109657782,2	K562	blood:
35	chr6:109666918..109669416-chr6:109676939..109680789,3	MCF-7	breast:
36	chr6:109665666..109669140-chr6:109702115..109705884,4	MCF-7	breast:
37	chr6:109665756..109668556-chr6:109669464..109671369,2	MCF-7	breast:
38	chr6:109635700..109637262-chr6:109660535..109662631,2	K562	blood:
39	chr6:109654193..109659063-chr6:109701671..109705275,8	MCF-7	breast:
40	chr6:109649495..109651298-chr6:109651628..109654623,3	K562	blood:
41	chr6:109624816..109627658-chr6:109659263..109661556,2	K562	blood:
42	chr6:109627149..109629191-chr6:109643019..109645963,3	K562	blood:
43	chr6:109638384..109640553-chr6:109645179..109647068,2	K562	blood:
44	chr6:109659415..109661984-chr6:109702237..109705687,4	MCF-7	breast:
45	chr6:109667580..109670112-chr6:109691835..109693593,2	MCF-7	breast:
46	chr6:109662626..109665384-chr6:109701229..109703998,3	MCF-7	breast:
47	chr6:109631513..109637347-chr6:109638223..109642715,6	K562	blood:
48	chr6:109414928..109417329-chr6:109668805..109670563,2	K562	blood:
49	chr6:109666475..109669130-chr6:109690489..109693013,2	K562	blood:
50	chr6:109630124..109632200-chr6:109645326..109646848,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C6orf183-4	chr6:109635266-109635398	NONHSAT114392

No data

Variant related genes	Relation type
RPL7P28	TF binding region
CCDC162P	TF binding region
ENSG00000233908	chromatin interactions
ENSG00000218632	chromatin interactions
ENSG00000201023	chromatin interactions
ENSG00000203799	chromatin interactions
ENSG00000080546	chromatin interactions
ENSG00000135535	chromatin interactions
ENSG00000219700	chromatin interactions
ENSG00000183137	chromatin interactions
ENSG00000260273	chromatin interactions

Extended variants
information (count: 1295 )
Associated
traits (count: 115 )

Variant overlapped rSNPs/rCNVs (count:1295 , 50 per page) page: 1 2 3 4 5 6 7 ... 26

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs186839912	chr6:109633053-109633054	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs557773727	chr6:109633117-109633118	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs369996253	chr6:109633154-109633155	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs148525728	chr6:109633168-109633169	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs544124665	chr6:109633171-109633172	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs75670734	chr6:109633177-109633178	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs530282911	chr6:109633186-109633187	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs142883648	chr6:109633189-109633190	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs374557628	chr6:109633203-109633204	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs114394997	chr6:109633216-109633217	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs78824244	chr6:109633237-109633238	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs13200047	chr6:109633244-109633245	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
13	rs551485490	chr6:109633251-109633252	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs564901648	chr6:109633381-109633382	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs530444515	chr6:109633404-109633405	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs550517693	chr6:109633474-109633475	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs192545550	chr6:109633510-109633511	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs529700081	chr6:109633535-109633536	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs546439357	chr6:109633542-109633543	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs532550919	chr6:109633554-109633555	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs566323383	chr6:109633613-109633614	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs201274909	chr6:109633709-109633710	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs541808653	chr6:109633797-109633798	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs552282085	chr6:109633808-109633809	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs7757347	chr6:109633815-109633816	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs371572749	chr6:109633826-109633827	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs36088143	chr6:109633850-109633851	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs557272676	chr6:109633861-109633862	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs574297785	chr6:109633921-109633922	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs537891247	chr6:109633932-109633933	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs116878883	chr6:109633963-109633964	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs553637699	chr6:109634026-109634027	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs573452257	chr6:109634043-109634044	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs113971605	chr6:109634117-109634118	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs9487059	chr6:109634158-109634159	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs564989963	chr6:109634162-109634163	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs115646000	chr6:109634177-109634178	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs543868364	chr6:109634245-109634246	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs560936881	chr6:109634268-109634269	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs553175165	chr6:109634271-109634272	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs529987075	chr6:109634279-109634280	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs546476385	chr6:109634361-109634362	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs566359588	chr6:109634365-109634366	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs184775709	chr6:109634417-109634418	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs554627206	chr6:109634428-109634429	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs9487060	chr6:109634456-109634457	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs545277897	chr6:109634475-109634476	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs571652012	chr6:109634523-109634524	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs537547279	chr6:109634556-109634557	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs146593995	chr6:109634572-109634573	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:115)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Prostate cancer	18632612	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
Developmental delay	19490664	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Burkitt''s lymphoma	18698080	CNVD
Ovarian cancer	21720365	CNVD
Basal cell lymphoma	17170743	CNVD
Prostate cancer	16573809	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21785460	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16461572	CNVD
Neurocytoma	17123091	CNVD
Cancer	20164920	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Chronic lymphocytic leukemia	17805327	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Autism	17483303	CNVD
Chordoma	21602918	CNVD
Kartagener syndrome	16639409	CNVD
abnormal development	18461090	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Systemic lupus erythematosus	19220326	CNVD
Cancer	17160897	CNVD
Autism	19546859	CNVD
Schizophrenia	19546859	CNVD
Tourette syndrome	19546859	CNVD
Acute lymphoblastic leukemia	17229543	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17133270	CNVD
Follicular lymphoma	18703704	CNVD
Mental retardation	17621639	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:622 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109619400-109638000	Weak transcription	HepG2	liver
2	chr6:109621600-109634000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:109625800-109634200	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:109626200-109634200	Weak transcription	Psoas Muscle	Psoas
5	chr6:109626200-109638800	Weak transcription	Thymus	Thymus
6	chr6:109627600-109639000	Weak transcription	Left Ventricle	heart
7	chr6:109629600-109634000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:109629600-109639800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:109629600-109654000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:109630200-109634400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr6:109630800-109636200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:109630800-109636200	Weak transcription	Fetal Intestine Large	intestine
13	chr6:109631000-109636200	Weak transcription	Fetal Intestine Small	intestine
14	chr6:109631200-109633600	Weak transcription	Stomach Mucosa	stomach
15	chr6:109631600-109634200	Weak transcription	K562	blood
16	chr6:109631600-109636200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:109632000-109633800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:109632400-109633400	Enhancers	NHDF-Ad	bronchial
19	chr6:109634000-109636200	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr6:109634000-109636400	Enhancers	Fetal Muscle Trunk	muscle
21	chr6:109634200-109635600	Enhancers	K562	blood
22	chr6:109634200-109635800	Enhancers	Psoas Muscle	Psoas
23	chr6:109634200-109641200	Enhancers	Fetal Muscle Leg	muscle
24	chr6:109634400-109634600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr6:109634400-109635800	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr6:109634400-109636800	Enhancers	Brain Substantia Nigra	brain
27	chr6:109634400-109644000	Weak transcription	Spleen	Spleen
28	chr6:109634600-109637000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr6:109634800-109636600	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr6:109635000-109635600	Enhancers	HSMMtube	muscle
31	chr6:109635200-109635400	Enhancers	Brain Anterior Caudate	brain
32	chr6:109635200-109635600	Enhancers	Liver	Liver
33	chr6:109635200-109639800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr6:109635200-109639800	Enhancers	Brain Cingulate Gyrus	brain
35	chr6:109635200-109641200	Enhancers	Brain Hippocampus Middle	brain
36	chr6:109635400-109635600	Enhancers	Brain Germinal Matrix	brain
37	chr6:109635400-109636000	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr6:109635400-109637000	Enhancers	Brain Angular Gyrus	brain
39	chr6:109635600-109635800	Enhancers	Pancreas	Pancrea
40	chr6:109635600-109636600	Weak transcription	Brain Germinal Matrix	brain
41	chr6:109635600-109637800	Weak transcription	Liver	Liver
42	chr6:109635600-109639400	Weak transcription	K562	blood
43	chr6:109635600-109646600	Weak transcription	HSMMtube	muscle
44	chr6:109635800-109639000	Weak transcription	Psoas Muscle	Psoas
45	chr6:109635800-109639000	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr6:109635800-109639200	Weak transcription	Pancreas	Pancrea
47	chr6:109636000-109636400	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr6:109636200-109636600	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr6:109636200-109637200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr6:109636200-109637400	Enhancers	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links