Variant report

Variant	rs9487059
Chromosome Location	chr6:109634158-109634159
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109631513..109637347-chr6:109638223..109642715,6	K562	blood:
2	chr6:109627945..109629933-chr6:109634086..109636945,2	MCF-7	breast:
3	chr6:109633494..109635331-chr6:109638661..109641514,2	MCF-7	breast:
4	chr6:109629394..109632437-chr6:109632467..109635413,3	K562	blood:

Variant related genes	Relation type
ENSG00000203799	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1008083	0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1608043	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs352850	1.00[ASN][1000 genomes]
rs352851	1.00[ASN][1000 genomes]
rs55863350	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs61002917	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6568562	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6568565	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6909900	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6924768	0.90[YRI][hapmap];0.89[AMR][1000 genomes]
rs73512467	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73518692	0.89[AMR][1000 genomes]
rs73762681	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7753882	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7754671	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7762891	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7773100	0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9480917	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9480925	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487019	0.95[YRI][hapmap]
rs9487024	1.00[ASN][1000 genomes]
rs9487029	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9487030	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9487031	0.95[YRI][hapmap]
rs9487035	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487044	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487045	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487050	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs949883	0.95[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5435	chr6:109633035-109669127	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109619400-109638000	Weak transcription	HepG2	liver
2	chr6:109625800-109634200	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:109626200-109634200	Weak transcription	Psoas Muscle	Psoas
4	chr6:109626200-109638800	Weak transcription	Thymus	Thymus
5	chr6:109627600-109639000	Weak transcription	Left Ventricle	heart
6	chr6:109629600-109639800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:109629600-109654000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:109630200-109634400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:109630800-109636200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:109630800-109636200	Weak transcription	Fetal Intestine Large	intestine
11	chr6:109631000-109636200	Weak transcription	Fetal Intestine Small	intestine
12	chr6:109631600-109634200	Weak transcription	K562	blood
13	chr6:109631600-109636200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:109634000-109636200	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr6:109634000-109636400	Enhancers	Fetal Muscle Trunk	muscle

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