Variant report

Variant	rs9480925
Chromosome Location	chr6:109631609-109631610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109631513..109637347-chr6:109638223..109642715,6	K562	blood:
2	chr6:109630848..109632942-chr6:109701333..109705023,3	MCF-7	breast:
3	chr6:109628891..109631970-chr6:109702157..109703919,3	K562	blood:
4	chr6:109625539..109627045-chr6:109630480..109632036,2	K562	blood:
5	chr6:109624351..109631970-chr6:109702157..109706422,11	K562	blood:
6	chr6:109508798..109509659-chr6:109630971..109631761,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260273	Chromatin interaction
ENSG00000201023	Chromatin interaction
ENSG00000135535	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1008083	0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1105155	0.83[ASW][hapmap]
rs13209277	0.83[YRI][hapmap]
rs1608043	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs55863350	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs61002917	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6568562	0.91[ASW][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6568565	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6909900	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6924768	0.83[ASW][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.87[YRI][hapmap];0.89[AMR][1000 genomes]
rs73512467	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73518692	0.89[AMR][1000 genomes]
rs73762681	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7753882	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7754671	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7762891	0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7773100	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9480917	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487018	0.82[YRI][hapmap]
rs9487019	0.95[YRI][hapmap]
rs9487029	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9487030	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9487031	0.95[YRI][hapmap]
rs9487035	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487044	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487045	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487050	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487059	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs949883	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527719	chr6:109624937-109631609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109619400-109638000	Weak transcription	HepG2	liver
2	chr6:109621600-109634000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:109625800-109634200	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:109626200-109631800	Weak transcription	Placenta	Placenta
5	chr6:109626200-109634200	Weak transcription	Psoas Muscle	Psoas
6	chr6:109626200-109638800	Weak transcription	Thymus	Thymus
7	chr6:109627600-109639000	Weak transcription	Left Ventricle	heart
8	chr6:109629600-109634000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:109629600-109639800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:109629600-109654000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:109630000-109632400	Weak transcription	NHDF-Ad	bronchial
12	chr6:109630200-109634400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:109630600-109632000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:109630600-109632600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr6:109630800-109636200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:109630800-109636200	Weak transcription	Fetal Intestine Large	intestine
17	chr6:109631000-109636200	Weak transcription	Fetal Intestine Small	intestine
18	chr6:109631200-109633600	Weak transcription	Stomach Mucosa	stomach
19	chr6:109631600-109634200	Weak transcription	K562	blood
20	chr6:109631600-109636200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links