Variant report

Variant	rs9487050
Chromosome Location	chr6:109616507-109616508
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:15)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:15 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HDAC2	chr6:109616372-109616599	HepG2	liver:	n/a	n/a
2	EP300	chr6:109616232-109616610	HepG2	liver:	n/a	chr6:109616269-109616283
3	NR2F2	chr6:109616155-109617084	HepG2	liver:	n/a	n/a
4	FOXA1	chr6:109616242-109616809	HepG2	liver:	n/a	n/a
5	FOXA1	chr6:109616252-109616795	HepG2	liver:	n/a	n/a
6	HDAC2	chr6:109616226-109616666	HepG2	liver:	n/a	n/a
7	HNF4A	chr6:109616350-109616589	HepG2	liver:	n/a	n/a
8	FOXA1	chr6:109616360-109616593	HepG2	liver:	n/a	n/a
9	FOXA1	chr6:109616243-109616659	HepG2	liver:	n/a	n/a
10	EP300	chr6:109616247-109616687	HepG2	liver:	n/a	chr6:109616269-109616283
11	EP300	chr6:109616429-109616633	HepG2	liver:	n/a	n/a
12	FOXA2	chr6:109616144-109616871	HepG2	liver:	n/a	n/a
13	ARID3A	chr6:109616273-109617041	HepG2	liver:	n/a	n/a
14	FOXA2	chr6:109616305-109616657	HepG2	liver:	n/a	n/a
15	NFIC	chr6:109616191-109616980	HepG2	liver:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:109414698..109417421-chr6:109614595..109617032,3	MCF-7	breast:
2	chr6:109616158..109619267-chr6:109664026..109668209,4	MCF-7	breast:
3	chr6:109615706..109617299-chr6:109661071..109663820,2	MCF-7	breast:
4	chr6:109616179..109618619-chr6:109761422..109762940,2	K562	blood:
5	chr6:109561591..109563297-chr6:109615936..109618604,2	K562	blood:
6	chr6:109541416..109543560-chr6:109616012..109618470,2	MCF-7	breast:
7	chr6:109574650..109576524-chr6:109616108..109618484,2	MCF-7	breast:
8	chr6:109616026..109618263-chr6:109705569..109707885,2	MCF-7	breast:
9	chr6:109573548..109576150-chr6:109616367..109617967,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000238474	TF binding region
PTCHD3P3	TF binding region
ENSG00000135587	Chromatin interaction
ENSG00000183137	Chromatin interaction
ENSG00000080546	Chromatin interaction
ENSG00000203799	Chromatin interaction
ENSG00000185250	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1008083	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1608043	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs55863350	0.89[AMR][1000 genomes]
rs61002917	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6568562	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6568565	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6909900	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6924768	0.89[AMR][1000 genomes]
rs73512467	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73518692	0.89[AMR][1000 genomes]
rs73762681	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7753882	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7754671	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7762891	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7773100	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9480917	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9480925	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487029	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9487030	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9487035	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487045	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487056	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487059	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs949883	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109611200-109618200	Weak transcription	Gastric	stomach
2	chr6:109613000-109619000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:109613200-109619000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:109613400-109620200	Weak transcription	Right Atrium	heart
5	chr6:109613600-109617800	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:109613600-109620600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr6:109613800-109617400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:109613800-109618200	Weak transcription	Brain Anterior Caudate	brain
9	chr6:109614000-109618200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:109614000-109618400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:109614000-109618600	Weak transcription	Brain Angular Gyrus	brain
12	chr6:109614000-109619000	Weak transcription	Brain Substantia Nigra	brain
13	chr6:109614000-109622000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:109614200-109618400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr6:109614200-109619000	Weak transcription	Brain Hippocampus Middle	brain
16	chr6:109614400-109621000	Enhancers	Primary hematopoietic stem cells	blood
17	chr6:109614600-109619400	Enhancers	HepG2	liver
18	chr6:109614800-109624400	Enhancers	K562	blood
19	chr6:109615000-109619600	Enhancers	Fetal Intestine Large	intestine
20	chr6:109615200-109617000	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr6:109615200-109619400	Enhancers	Stomach Mucosa	stomach
22	chr6:109615200-109619800	Enhancers	Fetal Intestine Small	intestine
23	chr6:109615400-109617400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:109615400-109618400	Weak transcription	Small Intestine	intestine
25	chr6:109615400-109624600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr6:109615600-109616800	Weak transcription	Primary B cells from cord blood	blood
27	chr6:109615600-109617000	Weak transcription	Pancreas	Pancrea
28	chr6:109615600-109617600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr6:109615600-109617800	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr6:109615600-109617800	Weak transcription	NHDF-Ad	bronchial
31	chr6:109615600-109618000	Weak transcription	Placenta	Placenta
32	chr6:109615600-109618200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:109615600-109618200	Weak transcription	Fetal Muscle Trunk	muscle
34	chr6:109615600-109618200	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr6:109615600-109618400	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr6:109615600-109618400	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr6:109615600-109619000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr6:109615600-109619200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr6:109615600-109619200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr6:109615600-109619400	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr6:109615600-109622200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr6:109615600-109622600	Weak transcription	Left Ventricle	heart
43	chr6:109615600-109622600	Weak transcription	Right Ventricle	heart
44	chr6:109615800-109617400	Weak transcription	Stomach Smooth Muscle	stomach
45	chr6:109615800-109617800	Weak transcription	Duodenum Mucosa	Duodenum
46	chr6:109615800-109618400	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr6:109615800-109619200	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr6:109615800-109619200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr6:109615800-109620200	Weak transcription	Psoas Muscle	Psoas
50	chr6:109616000-109618000	Weak transcription	Fetal Heart	heart

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