Variant report

Variant	rs55863350
Chromosome Location	chr6:109579822-109579823
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1008083	0.89[AMR][1000 genomes]
rs1608043	0.88[AFR][1000 genomes]
rs61002917	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6568562	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6568565	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6909900	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6924768	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73512467	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73518692	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73762681	0.92[AFR][1000 genomes]
rs7753882	0.89[AMR][1000 genomes]
rs7754671	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7762891	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7773100	0.89[AMR][1000 genomes]
rs9480917	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9480925	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9487018	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9487029	0.92[AFR][1000 genomes]
rs9487030	0.92[AFR][1000 genomes]
rs9487035	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9487044	0.89[AMR][1000 genomes]
rs9487045	0.89[AMR][1000 genomes]
rs9487050	0.89[AMR][1000 genomes]
rs9487056	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9487059	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs949883	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109564000-109590400	Weak transcription	Psoas Muscle	Psoas
2	chr6:109572800-109590400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:109572800-109595200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:109573200-109589800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:109573600-109590200	Weak transcription	Gastric	stomach
6	chr6:109574600-109583400	Weak transcription	Placenta	Placenta
7	chr6:109575200-109582800	Weak transcription	Colon Smooth Muscle	Colon
8	chr6:109575800-109589200	Weak transcription	Pancreas	Pancrea
9	chr6:109577200-109583400	Weak transcription	Fetal Kidney	kidney
10	chr6:109577600-109581800	Weak transcription	Adipose Nuclei	Adipose
11	chr6:109577600-109583000	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:109577800-109581600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:109577800-109582200	Weak transcription	Fetal Stomach	stomach
14	chr6:109578000-109582000	Weak transcription	Fetal Lung	lung
15	chr6:109578800-109580400	Enhancers	HepG2	liver
16	chr6:109579000-109580600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:109579000-109583200	Weak transcription	Fetal Muscle Trunk	muscle
18	chr6:109579600-109584200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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