Variant report

Variant	rs6924768
Chromosome Location	chr6:109582135-109582136
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109580166..109583539-chr6:109585250..109587755,3	MCF-7	breast:
2	chr6:109573600..109575785-chr6:109578513..109582228,5	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1008083	0.85[YRI][hapmap];0.89[AMR][1000 genomes]
rs1105155	0.83[ASW][hapmap];0.81[MKK][hapmap]
rs1608043	0.81[AFR][1000 genomes]
rs55863350	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61002917	0.89[AMR][1000 genomes]
rs6568562	0.91[ASW][hapmap];1.00[LWK][hapmap];0.81[MKK][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6568565	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6909900	0.86[YRI][hapmap];0.89[AMR][1000 genomes]
rs73512467	0.89[AMR][1000 genomes]
rs73518692	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73762681	0.85[AFR][1000 genomes]
rs7753882	0.87[YRI][hapmap];0.89[AMR][1000 genomes]
rs7754671	0.89[AMR][1000 genomes]
rs7762891	0.83[YRI][hapmap];0.89[AMR][1000 genomes]
rs7773100	0.87[YRI][hapmap];0.89[AMR][1000 genomes]
rs9480917	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9480925	0.83[ASW][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.87[YRI][hapmap];0.89[AMR][1000 genomes]
rs9487018	0.89[AMR][1000 genomes]
rs9487019	0.83[YRI][hapmap]
rs9487029	0.85[AFR][1000 genomes]
rs9487030	0.85[AFR][1000 genomes]
rs9487031	0.83[YRI][hapmap]
rs9487035	0.89[AMR][1000 genomes]
rs9487044	0.89[AMR][1000 genomes]
rs9487045	0.89[AMR][1000 genomes]
rs9487050	0.89[AMR][1000 genomes]
rs9487056	0.89[AMR][1000 genomes]
rs9487059	0.90[YRI][hapmap];0.89[AMR][1000 genomes]
rs949883	0.87[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109564000-109590400	Weak transcription	Psoas Muscle	Psoas
2	chr6:109572800-109590400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:109572800-109595200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:109573200-109589800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:109573600-109590200	Weak transcription	Gastric	stomach
6	chr6:109574600-109583400	Weak transcription	Placenta	Placenta
7	chr6:109575200-109582800	Weak transcription	Colon Smooth Muscle	Colon
8	chr6:109575800-109589200	Weak transcription	Pancreas	Pancrea
9	chr6:109577200-109583400	Weak transcription	Fetal Kidney	kidney
10	chr6:109577600-109583000	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:109577800-109582200	Weak transcription	Fetal Stomach	stomach
12	chr6:109579000-109583200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr6:109579600-109584200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr6:109580400-109583000	Weak transcription	HepG2	liver
15	chr6:109580600-109583400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:109580800-109582200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:109580800-109582400	Enhancers	Muscle Satellite Cultured Cells	--
18	chr6:109580800-109582400	Enhancers	Osteobl	bone
19	chr6:109581000-109582400	Enhancers	NHDF-Ad	bronchial
20	chr6:109581000-109583600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:109581200-109582400	Enhancers	HSMM	muscle
22	chr6:109581400-109582200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:109581600-109582200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:109581600-109582200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:109581600-109583200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:109581800-109582200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:109581800-109582200	Enhancers	HSMMtube	muscle
28	chr6:109581800-109582200	Enhancers	NH-A	brain
29	chr6:109581800-109582400	Enhancers	Adipose Nuclei	Adipose
30	chr6:109581800-109582400	Enhancers	Ovary	ovary
31	chr6:109581800-109583800	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr6:109581800-109588800	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr6:109582000-109582200	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links