Variant report

Variant	rs1105155
Chromosome Location	chr6:109573490-109573491
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109571949..109573632-chr6:109575692..109577671,2	K562	blood:
2	chr6:109562155..109565260-chr6:109572597..109575584,3	K562	blood:
3	chr6:109572074..109573925-chr6:109578773..109580285,2	MCF-7	breast:
4	chr6:109571108..109577979-chr6:109701689..109707468,12	MCF-7	breast:
5	chr6:109573090..109575242-chr6:109576098..109578266,2	K562	blood:
6	chr6:109571834..109573964-chr6:109613756..109616504,2	MCF-7	breast:
7	chr6:109556632..109559004-chr6:109572624..109575061,2	K562	blood:
8	chr6:109572844..109579013-chr6:109586013..109590515,6	MCF-7	breast:
9	chr6:109545348..109547132-chr6:109572253..109575159,2	MCF-7	breast:
10	chr6:109414191..109416076-chr6:109573130..109575129,2	MCF-7	breast:
11	chr20:52270865..52273863-chr6:109572991..109575305,2	MCF-7	breast:
12	chr6:109572724..109576435-chr6:109701396..109704510,5	MCF-7	breast:
13	chr6:109572927..109577072-chr6:109577808..109581744,6	MCF-7	breast:
14	chr6:109573371..109575785-chr6:109578513..109580887,3	K562	blood:
15	chr6:109571423..109573781-chr6:109659713..109661931,2	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000080546	Chromatin interaction
ENSG00000243587	Chromatin interaction
ENSG00000203799	Chromatin interaction
ENSG00000135535	Chromatin interaction
ENSG00000260273	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs61745372	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6568562	0.91[ASW][hapmap]
rs6924768	0.83[ASW][hapmap];0.81[MKK][hapmap]
rs73520752	0.83[AMR][1000 genomes]
rs73520760	0.83[AMR][1000 genomes]
rs7743328	0.83[AMR][1000 genomes]
rs9480925	0.83[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527657	chr6:109533385-109579675	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109564000-109590400	Weak transcription	Psoas Muscle	Psoas
2	chr6:109572200-109578800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:109572400-109577600	Enhancers	Adipose Nuclei	Adipose
4	chr6:109572600-109573800	Enhancers	K562	blood
5	chr6:109572600-109574200	Enhancers	Ovary	ovary
6	chr6:109572600-109574400	Enhancers	Liver	Liver
7	chr6:109572600-109577800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:109572800-109573600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
9	chr6:109572800-109574000	Weak transcription	Fetal Intestine Small	intestine
10	chr6:109572800-109574000	Weak transcription	Placenta	Placenta
11	chr6:109572800-109575000	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr6:109572800-109590400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:109572800-109595200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:109573000-109574000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr6:109573200-109574800	Enhancers	HepG2	liver
16	chr6:109573200-109575200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:109573200-109589800	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr6:109573400-109573600	Enhancers	A549	lung
19	chr6:109573400-109575200	Enhancers	Colon Smooth Muscle	Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links