Variant report

Variant	rs56150455
Chromosome Location	chr6:109629142-109629143
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CBX3	chr6:109629106-109629725	K562	blood:	n/a	n/a
2	EP300	chr6:109629135-109629666	K562	blood:	n/a	n/a
3	TBL1XR1	chr6:109629049-109629627	K562	blood:	n/a	n/a
4	USF1	chr6:109629139-109629662	K562	blood:	n/a	n/a
5	CEBPD	chr6:109629137-109629784	K562	blood:	n/a	n/a
6	STAT5A	chr6:109629108-109629717	K562	blood:	n/a	n/a
7	TEAD4	chr6:109629036-109629780	K562	blood:	n/a	n/a
8	STAT3	chr6:109628973-109629173	MCF10A-Er-Src	breast:	n/a	n/a
9	STAT5A	chr6:109629122-109629639	K562	blood:	n/a	n/a
10	RCOR1	chr6:109628071-109629737	K562	blood:	n/a	n/a
11	TEAD4	chr6:109629047-109629748	K562	blood:	n/a	n/a
12	GATA1	chr6:109629077-109629760	PBDE	blood:	n/a	chr6:109629462-109629473
13	JUN	chr6:109629044-109629796	K562	blood:	n/a	chr6:109629443-109629452 chr6:109629444-109629453 chr6:109629714-109629723 chr6:109629615-109629626
14	NR2F2	chr6:109628933-109629858	K562	blood:	n/a	n/a
15	NR2F2	chr6:109629066-109629764	K562	blood:	n/a	n/a
16	CEBPD	chr6:109629097-109629652	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:109627149..109629191-chr6:109642784..109645963,3	K562	blood:
2	chr6:109627945..109629933-chr6:109634086..109636945,2	MCF-7	breast:
3	chr6:109627149..109629191-chr6:109643019..109645963,3	K562	blood:
4	chr6:109628891..109631970-chr6:109702157..109703919,3	K562	blood:
5	chr6:109624351..109631970-chr6:109702157..109706422,11	K562	blood:
6	chr6:109626552..109629448-chr6:109691931..109694820,2	K562	blood:

Variant related genes	Relation type
CCDC162P	TF binding region
ENSG00000135535	Chromatin interaction
ENSG00000260273	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13205489	1.00[ASN][1000 genomes]
rs13220206	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1812230	1.00[ASN][1000 genomes]
rs28360564	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34352435	1.00[ASN][1000 genomes]
rs34684377	1.00[ASN][1000 genomes]
rs34739891	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34780834	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34854922	1.00[ASN][1000 genomes]
rs34949378	1.00[ASN][1000 genomes]
rs36094641	1.00[ASN][1000 genomes]
rs61734155	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71558363	1.00[ASN][1000 genomes]
rs71558364	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs932222	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527719	chr6:109624937-109631609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109619400-109629200	Weak transcription	Gastric	stomach
2	chr6:109619400-109638000	Weak transcription	HepG2	liver
3	chr6:109621400-109629600	Enhancers	Primary hematopoietic stem cells	blood
4	chr6:109621600-109634000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:109623600-109629400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:109624600-109631000	Enhancers	Fetal Intestine Small	intestine
7	chr6:109625800-109629400	Weak transcription	HSMM	muscle
8	chr6:109625800-109634200	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:109626200-109629200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:109626200-109629200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:109626200-109629200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:109626200-109629200	Weak transcription	Right Atrium	heart
13	chr6:109626200-109629400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:109626200-109629600	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr6:109626200-109631800	Weak transcription	Placenta	Placenta
16	chr6:109626200-109634200	Weak transcription	Psoas Muscle	Psoas
17	chr6:109626200-109638800	Weak transcription	Thymus	Thymus
18	chr6:109626400-109629200	Enhancers	K562	blood
19	chr6:109627000-109629200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:109627000-109629200	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr6:109627000-109630800	Enhancers	Fetal Intestine Large	intestine
22	chr6:109627200-109629200	Weak transcription	Adipose Nuclei	Adipose
23	chr6:109627200-109629200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr6:109627400-109629200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr6:109627600-109630800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr6:109627600-109639000	Weak transcription	Left Ventricle	heart
27	chr6:109628000-109629200	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr6:109628000-109629600	Enhancers	Hela-S3	cervix
29	chr6:109628000-109630600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:109628200-109629200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:109628200-109629600	Enhancers	Aorta	Aorta
32	chr6:109628200-109629800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr6:109628400-109630000	Enhancers	Stomach Mucosa	stomach
34	chr6:109628400-109630000	Enhancers	NHDF-Ad	bronchial
35	chr6:109628600-109629400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:109629000-109630000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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