Variant report

Variant	nsv1000631
Chromosome Location	chr3:142516367-142572058
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:903)
CpG islands
(count:306)
Chromatin interactive
region (count:66)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:1)

(count:903 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr3:142569158-142569363	K562	blood:	n/a	n/a
2	ARID3A	chr3:142569142-142569931	HepG2	liver:	n/a	n/a
3	ARID3A	chr3:142565592-142566081	HepG2	liver:	n/a	n/a
4	ARID3A	chr3:142547564-142547817	K562	blood:	n/a	n/a
5	ARID3A	chr3:142563241-142563576	K562	blood:	n/a	n/a
6	ATF1	chr3:142536816-142537094	K562	blood:	n/a	n/a
7	ATF1	chr3:142569159-142569634	K562	blood:	n/a	n/a
8	ATF1	chr3:142527013-142527282	K562	blood:	n/a	n/a
9	BACH1	chr3:142547547-142547896	H1-hESC	embryonic stem cell:	n/a	n/a
10	BACH1	chr3:142547582-142547804	K562	blood:	n/a	n/a
11	BHLHE40	chr3:142527386-142527725	GM12878	blood:	n/a	n/a
12	BHLHE40	chr3:142565716-142565945	HepG2	liver:	n/a	n/a
13	BHLHE40	chr3:142527000-142527242	K562	blood:	n/a	n/a
14	BHLHE40	chr3:142547672-142547877	GM12878	blood:	n/a	n/a
15	BHLHE40	chr3:142569193-142569545	K562	blood:	n/a	n/a
16	BHLHE40	chr3:142536841-142537106	K562	blood:	n/a	n/a
17	BHLHE40	chr3:142547561-142547864	K562	blood:	n/a	n/a
18	BRCA1	chr3:142547645-142547892	GM12878	blood:	n/a	n/a
19	BRCA1	chr3:142547584-142547870	H1-hESC	embryonic stem cell:	n/a	n/a
20	CBX3	chr3:142569126-142569573	K562	blood:	n/a	n/a
21	CCNT2	chr3:142527049-142527269	K562	blood:	n/a	n/a
22	CCNT2	chr3:142547599-142547821	K562	blood:	n/a	n/a
23	CCNT2	chr3:142536864-142537064	K562	blood:	n/a	n/a
24	CCNT2	chr3:142569213-142569473	K562	blood:	n/a	n/a
25	CEBPB	chr3:142547536-142547874	Hela-S3	cervix:	n/a	n/a
26	CEBPB	chr3:142569289-142569967	A549	lung:	n/a	chr3:142569773-142569784
27	CEBPB	chr3:142565693-142565873	HepG2	liver:	n/a	chr3:142565773-142565784
28	CEBPB	chr3:142569161-142570012	Hela-S3	cervix:	n/a	chr3:142569773-142569784
29	CEBPB	chr3:142569428-142569935	H1-hESC	embryonic stem cell:	n/a	chr3:142569773-142569784
30	CEBPB	chr3:142569013-142570005	HCT-116	colon:	n/a	chr3:142569773-142569784
31	CEBPB	chr3:142569383-142569549	HepG2	liver:	n/a	n/a
32	CEBPB	chr3:142569251-142570035	A549	lung:	n/a	chr3:142569773-142569784
33	CEBPB	chr3:142527077-142527331	Hela-S3	cervix:	n/a	n/a
34	CEBPB	chr3:142570887-142571162	A549	lung:	n/a	n/a
35	CEBPB	chr3:142554048-142554214	K562	blood:	n/a	chr3:142554151-142554162
36	CEBPB	chr3:142569290-142569945	IMR90	lung:	n/a	chr3:142569773-142569784
37	CEBPB	chr3:142569620-142569917	K562	blood:	n/a	chr3:142569773-142569784
38	CEBPB	chr3:142565673-142565854	HepG2	liver:	n/a	chr3:142565773-142565784
39	CEBPB	chr3:142554085-142554209	HepG2	liver:	n/a	chr3:142554151-142554162
40	CEBPB	chr3:142526936-142527419	IMR90	lung:	n/a	n/a
41	CEBPB	chr3:142569124-142570140	A549	lung:	n/a	chr3:142569773-142569784
42	CEBPB	chr3:142526871-142527361	HCT-116	colon:	n/a	n/a
43	CEBPB	chr3:142547578-142547815	K562	blood:	n/a	n/a
44	CEBPB	chr3:142569494-142569928	HepG2	liver:	n/a	chr3:142569773-142569784
45	CEBPB	chr3:142527078-142527278	HepG2	liver:	n/a	n/a
46	CEBPB	chr3:142564046-142564315	IMR90	lung:	n/a	chr3:142564191-142564202
47	CEBPB	chr3:142569610-142569900	HepG2	liver:	n/a	chr3:142569773-142569784
48	CEBPB	chr3:142564046-142564323	HepG2	liver:	n/a	chr3:142564191-142564202
49	CEBPB	chr3:142569200-142569965	K562	blood:	n/a	chr3:142569773-142569784
50	CEBPB	chr3:142569040-142569829	HCT-116	colon:	n/a	chr3:142569773-142569784

(count:306 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:142526350-142526400	PrEC	prostate:	n/a
2	chr3:142526350-142526400	PrEC	prostate:	n/a
3	chr3:142537016-142537066	HepG2	liver:	n/a
4	chr3:142546513-142546563	GM12892	blood:	n/a
5	chr3:142546496-142546546	HUVEC	blood vessel:	n/a
6	chr3:142546545-142546595	MCF10A-Er-Src	breast:	n/a
7	chr3:142546513-142546563	U87	brain:	n/a
8	chr3:142546513-142546563	HEK293	kidney:	embryo
9	chr3:142526350-142526400	RPTEC	kidney:	n/a
10	chr3:142546513-142546563	Hela-S3	cervix:	n/a
11	chr3:142546496-142546546	HIPEpiC	eye:	n/a
12	chr3:142526350-142526400	SK-N-MC	brain:	n/a
13	chr3:142546496-142546546	HMEC	breast:	n/a
14	chr3:142546513-142546563	HRE	kidney:	n/a
15	chr3:142546513-142546563	HUVEC	blood vessel:	n/a
16	chr3:142537016-142537066	ECC-1	luminal epithelium:	n/a
17	chr3:142546513-142546563	AG10803	skin:	n/a
18	chr3:142546513-142546563	HNPCEpiC	eye:	n/a
19	chr3:142537016-142537066	SK-N-SH_RA	brain:	n/a
20	chr3:142526350-142526400	HCT-116	colon:	n/a
21	chr3:142537016-142537066	HCT-116	colon:	n/a
22	chr3:142526350-142526400	SK-N-SH_RA	brain:	n/a
23	chr3:142526350-142526400	K562	blood:	n/a
24	chr3:142546496-142546546	HPAEpiC	pulmonary alveolar:	n/a
25	chr3:142546545-142546595	BJ	skin:	n/a
26	chr3:142537016-142537066	HL-60	blood:	n/a
27	chr3:142546545-142546595	HPAEpiC	pulmonary alveolar:	n/a
28	chr3:142546545-142546595	AG09309	skin:	n/a
29	chr3:142546513-142546563	MCF-7	breast:	n/a
30	chr3:142546545-142546595	PFSK-1	brain:	n/a
31	chr3:142526350-142526400	SK-N-SH	brain:	n/a
32	chr3:142546496-142546546	PFSK-1	brain:	n/a
33	chr3:142546513-142546563	Jurkat	blood:	n/a
34	chr3:142526350-142526400	HMEC	breast:	n/a
35	chr3:142546496-142546546	NB4	blood:	n/a
36	chr3:142546545-142546595	AoSMC	blood vessel:	n/a
37	chr3:142526350-142526400	NHBE	bronchial:	n/a
38	chr3:142537016-142537066	LNCaP	prostate:	n/a
39	chr3:142537016-142537066	PrEC	prostate:	n/a
40	chr3:142546496-142546546	ovcar-3	ovarian:	n/a
41	chr3:142546496-142546546	HL-60	blood:	n/a
42	chr3:142526350-142526400	GM06990	blood:	n/a
43	chr3:142546513-142546563	HMEC	breast:	n/a
44	chr3:142526350-142526400	ovcar-3	ovarian:	n/a
45	chr3:142546513-142546563	ProgFib	skin:	n/a
46	chr3:142546545-142546595	HRPEpiC	eye:	n/a
47	chr3:142526350-142526400	HCM	heart:	n/a
48	chr3:142546513-142546563	SKMC	muscle:	n/a
49	chr3:142546496-142546546	SKMC	muscle:	n/a
50	chr3:142546513-142546563	AG09309	skin:	n/a

(count:66 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr3:142562977..142563804-chr3:142623385..142624273,2	MCF-7	breast:
2	chr3:142563301..142563874-chr3:142719338..142720019,2	K562	blood:
3	chr3:142524560..142526927-chr3:142527541..142530171,3	K562	blood:
4	chr3:142517462..142521813-chr3:142523317..142528126,6	K562	blood:
5	chr3:142294703..142296575-chr3:142522509..142525334,2	MCF-7	breast:
6	chr3:142535398..142538098-chr3:142539091..142541502,2	K562	blood:
7	chr3:142547227..142548190-chr3:142623907..142624526,2	MCF-7	breast:
8	chr3:142533068..142536166-chr3:142536773..142539169,3	MCF-7	breast:
9	chr3:142563526..142566403-chr3:142568817..142570925,4	MCF-7	breast:
10	chr3:142535398..142538098-chr3:142539091..142541502,2	K562	blood:
11	chr3:142547314..142547974-chr3:143392969..143393823,2	K562	blood:
12	chr3:142526371..142529815-chr3:142530861..142533602,4	K562	blood:
13	chr3:142547609..142549778-chr3:142567064..142569251,2	K562	blood:
14	chr3:142568776..142570761-chr3:142571127..142574010,2	MCF-7	breast:
15	chr3:142501123..142502989-chr3:142520509..142522645,2	K562	blood:
16	chr3:142569355..142573973-chr3:142582443..142586454,7	K562	blood:
17	chr3:142551760..142556727-chr3:142560075..142563403,5	K562	blood:
18	chr3:142547621..142548188-chr3:142759314..142760110,2	K562	blood:
19	chr3:142547386..142547981-chr3:142705677..142706489,2	MCF-7	breast:
20	chr3:142535626..142538451-chr3:142545286..142548849,3	K562	blood:
21	chr3:142547316..142548184-chr3:142712795..142713649,5	MCF-7	breast:
22	chr3:142562473..142564165-chr3:142575236..142576500,6	MCF-7	breast:
23	chr3:142547308..142547818-chr3:142575998..142576580,2	MCF-7	breast:
24	chr3:142563526..142566403-chr3:142568817..142570925,4	MCF-7	breast:
25	chr3:142549517..142551621-chr3:142586648..142588356,2	K562	blood:
26	chr3:142554457..142556627-chr3:142580536..142582345,2	K562	blood:
27	chr3:142531915..142534072-chr3:142735480..142737048,2	K562	blood:
28	chr3:142517462..142519257-chr3:142525193..142528126,2	K562	blood:
29	chr3:142551078..142554013-chr3:142555603..142557179,2	K562	blood:
30	chr3:142551078..142554013-chr3:142555603..142557179,2	K562	blood:
31	chr3:142551078..142553073-chr3:142554858..142557103,2	K562	blood:
32	chr3:142526371..142529664-chr3:142531134..142533602,3	K562	blood:
33	chr3:142296013..142297768-chr3:142571981..142574038,2	MCF-7	breast:
34	chr3:142547227..142548524-chr3:142712069..142713438,8	K562	blood:
35	chr3:142547606..142548431-chr3:142623663..142624603,2	K562	blood:
36	chr3:142526371..142529815-chr3:142530861..142533602,4	K562	blood:
37	chr3:142552613..142557408-chr3:142560075..142563518,4	K562	blood:
38	chr3:142536951..142539672-chr3:142544036..142547184,3	K562	blood:
39	chr3:142569424..142571817-chr3:142572523..142574368,2	K562	blood:
40	chr3:142548528..142550105-chr3:142551912..142554219,2	K562	blood:
41	chr3:142547609..142549778-chr3:142567064..142569251,2	K562	blood:
42	chr3:142568776..142570761-chr3:142571127..142574010,2	MCF-7	breast:
43	chr3:142522907..142524681-chr3:142538977..142541173,2	MCF-7	breast:
44	chr3:142519586..142522583-chr3:142524020..142526626,3	K562	blood:
45	chr3:142442488..142444417-chr3:142520460..142522860,2	MCF-7	breast:
46	chr3:142547322..142548218-chr3:142705325..142706773,4	MCF-7	breast:
47	chr3:142547592..142548148-chr3:142624035..142624538,2	MCF-7	breast:
48	chr3:142522907..142524681-chr3:142538977..142541173,2	MCF-7	breast:
49	chr3:142305747..142306744-chr3:142547578..142548165,3	MCF-7	breast:
50	chr3:142561991..142564358-chr3:142570106..142573419,3	K562	blood:

No data

(count:1 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	TRPC1	hsa-miR-335-5p	chr3:142525306-142525331

Variant related genes	Relation type
ENSG00000240950	TF binding region
PCOLCE2	TF binding region
RNU7-47P	TF binding region
ENSG00000240950	CpG island
PCOLCE2	CpG island
RNU7-47P	CpG island
ENSG00000144935	chromatin interactions
ENSG00000163710	chromatin interactions
ENSG00000163714	chromatin interactions
ENSG00000240950	chromatin interactions
ENSG00000251787	chromatin interactions
ENSG00000175054	chromatin interactions

Extended variants
information (count: 2080 )
Associated
traits (count: 52 )

Variant overlapped rSNPs/rCNVs (count:2080 , 50 per page) page: 1 2 3 4 5 6 7 ... 42

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2033912	chr3:142516367-142516368	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs374382833	chr3:142516380-142516381	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs183643214	chr3:142516383-142516384	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs188848821	chr3:142516465-142516466	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs543644353	chr3:142516654-142516655	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs561825465	chr3:142516721-142516722	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs16852615	chr3:142516826-142516827	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs141524976	chr3:142516832-142516833	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs571722768	chr3:142516852-142516853	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs111616304	chr3:142516864-142516865	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs139432063	chr3:142516865-142516866	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs552500103	chr3:142516941-142516942	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs369524385	chr3:142516975-142516976	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs181277202	chr3:142516982-142516983	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs79915499	chr3:142517099-142517100	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
16	rs187096474	chr3:142517156-142517157	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
17	rs191524931	chr3:142517161-142517162	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
18	rs9824476	chr3:142517163-142517164	Weak transcription	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs534834431	chr3:142517204-142517205	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
20	rs142696467	chr3:142517247-142517248	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
21	rs531956832	chr3:142517350-142517351	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs545526774	chr3:142517400-142517401	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs59784693	chr3:142517407-142517408	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs576357941	chr3:142517409-142517410	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs543729127	chr3:142517418-142517419	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs561914061	chr3:142517433-142517434	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs570183320	chr3:142517501-142517502	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs529475938	chr3:142517508-142517509	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs555393948	chr3:142517524-142517525	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs147360095	chr3:142517605-142517606	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs139540968	chr3:142517708-142517709	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs533349608	chr3:142517732-142517733	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs181649920	chr3:142517748-142517749	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs375823680	chr3:142517756-142517757	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs369975158	chr3:142517834-142517835	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs145094891	chr3:142517843-142517844	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs531605712	chr3:142517914-142517915	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs72990750	chr3:142517955-142517956	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs144507580	chr3:142518038-142518039	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs186347655	chr3:142518039-142518040	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs190699460	chr3:142518041-142518042	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs547465139	chr3:142518094-142518095	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs578041481	chr3:142518114-142518115	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs182224345	chr3:142518164-142518165	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs116320040	chr3:142518184-142518185	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs186622741	chr3:142518216-142518217	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs557303811	chr3:142518231-142518232	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs575648257	chr3:142518267-142518268	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs56666685	chr3:142518312-142518313	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs573678039	chr3:142518351-142518352	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:52)

Disease	PMID	Source
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
microdeletion syndrome	22180640	CNVD
Basal cell lymphoma	21115979	CNVD
Ovarian cancer	22174824	CNVD
Colorectal cancer	18645599	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Hepatocellular carcinoma	16750200	CNVD
Lung cancer	16740712	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myelodysplastic syndrome	21251322	CNVD
Blepharophimosis-ptosis-epicanthus inversus syndrome	22067867	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
abnormal development	18461090	CNVD
Cancer	21129771	CNVD
Ovarian cancer	23621864	CNVD
Breast cancer	21364760	CNVD
Congenital anomalies of the kidney and urinary tract	20605837	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:418 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142468200-142525200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:142468400-142525200	Weak transcription	Fetal Brain Male	brain
3	chr3:142468400-142526800	Weak transcription	NHDF-Ad	bronchial
4	chr3:142468400-142529400	Weak transcription	Brain Germinal Matrix	brain
5	chr3:142468600-142525200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr3:142475000-142527200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr3:142488800-142527000	Weak transcription	Brain Anterior Caudate	brain
8	chr3:142490200-142529400	Weak transcription	Fetal Muscle Leg	muscle
9	chr3:142490400-142522800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr3:142495400-142527000	Weak transcription	Brain Angular Gyrus	brain
11	chr3:142498600-142517400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:142498600-142522800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:142498600-142526800	Weak transcription	Osteobl	bone
14	chr3:142499000-142527000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr3:142499400-142547800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:142501600-142525000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr3:142501600-142525600	Weak transcription	Fetal Stomach	stomach
18	chr3:142501800-142518400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr3:142501800-142521400	Weak transcription	Ovary	ovary
20	chr3:142501800-142527000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:142501800-142528000	Weak transcription	Left Ventricle	heart
22	chr3:142501800-142535600	Weak transcription	Aorta	Aorta
23	chr3:142502000-142521400	Weak transcription	Adipose Nuclei	Adipose
24	chr3:142502000-142529400	Weak transcription	Fetal Muscle Trunk	muscle
25	chr3:142502400-142522800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:142504000-142521400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr3:142504200-142523200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:142507000-142521600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr3:142510400-142527200	Weak transcription	A549	lung
30	chr3:142510600-142523600	Weak transcription	HepG2	liver
31	chr3:142511600-142521800	Weak transcription	Fetal Lung	lung
32	chr3:142513600-142520400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr3:142513600-142523400	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr3:142513600-142527200	Weak transcription	Brain Substantia Nigra	brain
35	chr3:142513800-142520400	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr3:142513800-142523200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr3:142514400-142521400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr3:142514600-142520200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr3:142514600-142523400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr3:142514800-142572000	Weak transcription	Right Ventricle	heart
41	chr3:142515000-142523400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr3:142515000-142530800	Weak transcription	HSMM	muscle
43	chr3:142515200-142521000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr3:142515600-142527000	Weak transcription	K562	blood
45	chr3:142517400-142517600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr3:142517400-142517600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr3:142517400-142517800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr3:142517600-142522000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr3:142517600-142526800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr3:142517800-142523200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links