The 2.0 version of rSNPBase

Variant report

Variant rs555393948
Chromosome Location chr3:142517524-142517525
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:142468200-142525200 Weak transcription Stomach Smooth Muscle stomach
2 chr3:142468400-142525200 Weak transcription Fetal Brain Male brain
3 chr3:142468400-142526800 Weak transcription NHDF-Ad bronchial
4 chr3:142468400-142529400 Weak transcription Brain Germinal Matrix brain
5 chr3:142468600-142525200 Weak transcription Cortex derived primary cultured neurospheres brain
6 chr3:142475000-142527200 Weak transcription Brain Cingulate Gyrus brain
7 chr3:142488800-142527000 Weak transcription Brain Anterior Caudate brain
8 chr3:142490200-142529400 Weak transcription Fetal Muscle Leg muscle
9 chr3:142490400-142522800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
10 chr3:142495400-142527000 Weak transcription Brain Angular Gyrus brain
11 chr3:142498600-142522800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
12 chr3:142498600-142526800 Weak transcription Osteobl bone
13 chr3:142499000-142527000 Weak transcription Muscle Satellite Cultured Cells --
14 chr3:142499400-142547800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr3:142501600-142525000 Weak transcription Duodenum Smooth Muscle Duodenum
16 chr3:142501600-142525600 Weak transcription Fetal Stomach stomach
17 chr3:142501800-142518400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
18 chr3:142501800-142521400 Weak transcription Ovary ovary
19 chr3:142501800-142527000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
20 chr3:142501800-142528000 Weak transcription Left Ventricle heart
21 chr3:142501800-142535600 Weak transcription Aorta Aorta
22 chr3:142502000-142521400 Weak transcription Adipose Nuclei Adipose
23 chr3:142502000-142529400 Weak transcription Fetal Muscle Trunk muscle
24 chr3:142502400-142522800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
25 chr3:142504000-142521400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
26 chr3:142504200-142523200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr3:142507000-142521600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
28 chr3:142510400-142527200 Weak transcription A549 lung
29 chr3:142510600-142523600 Weak transcription HepG2 liver
30 chr3:142511600-142521800 Weak transcription Fetal Lung lung
31 chr3:142513600-142520400 Weak transcription ES-I3 Cell Line embryonic stem cell
32 chr3:142513600-142523400 Weak transcription H1 Cell Line embryonic stem cell
33 chr3:142513600-142527200 Weak transcription Brain Substantia Nigra brain
34 chr3:142513800-142520400 Weak transcription HUES64 Cell Line embryonic stem cell
35 chr3:142513800-142523200 Weak transcription iPS-18 Cell Line embryonic stem cell
36 chr3:142514400-142521400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
37 chr3:142514600-142520200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
38 chr3:142514600-142523400 Weak transcription Breast Myoepithelial Primary Cells Breast
39 chr3:142514800-142572000 Weak transcription Right Ventricle heart
40 chr3:142515000-142523400 Weak transcription Fetal Adrenal Gland Adrenal Gland
41 chr3:142515000-142530800 Weak transcription HSMM muscle
42 chr3:142515200-142521000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
43 chr3:142515600-142527000 Weak transcription K562 blood
44 chr3:142517400-142517600 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
45 chr3:142517400-142517600 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
46 chr3:142517400-142517800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015