Variant report

Variant	nsv1001476
Chromosome Location	chr3:119575386-120075417
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6117)
CpG islands
(count:4340)
Chromatin interactive
region (count:462)
LncRNA
region (count:56)
Mature miRNA
region (count: 0)
miRNA target
sites (count:4)

(count:6117 , 50 per page) page: 1 2 3 4 5 6 7 ... 123

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr3:119602664-119602702	HepG2	liver:	n/a	n/a
2	ARID3A	chr3:119814556-119814750	K562	blood:	n/a	n/a
3	ARID3A	chr3:119813181-119815090	HepG2	liver:	n/a	n/a
4	ARID3A	chr3:120019906-120020192	HepG2	liver:	n/a	n/a
5	ARID3A	chr3:119812558-119812883	HepG2	liver:	n/a	n/a
6	ARID3A	chr3:119901886-119902086	K562	blood:	n/a	n/a
7	ARID3A	chr3:120068451-120068619	K562	blood:	n/a	n/a
8	ARID3A	chr3:120067808-120069545	HepG2	liver:	n/a	n/a
9	ARID3A	chr3:119899895-119900146	HepG2	liver:	n/a	n/a
10	ARID3A	chr3:119993462-119994116	HepG2	liver:	n/a	n/a
11	ARID3A	chr3:119741594-119742000	K562	blood:	n/a	n/a
12	ARID3A	chr3:119963224-119963434	HepG2	liver:	n/a	n/a
13	ARID3A	chr3:120069759-120069842	K562	blood:	n/a	n/a
14	ATF1	chr3:119813289-119814150	K562	blood:	n/a	n/a
15	ATF1	chr3:119656097-119656360	K562	blood:	n/a	n/a
16	ATF2	chr3:119813170-119815211	GM12878	blood:	n/a	n/a
17	ATF2	chr3:119722853-119723210	H1-hESC	embryonic stem cell:	n/a	n/a
18	ATF2	chr3:119812342-119815042	GM12878	blood:	n/a	n/a
19	ATF2	chr3:119813770-119814862	H1-hESC	embryonic stem cell:	n/a	n/a
20	ATF2	chr3:120067926-120068711	GM12878	blood:	n/a	n/a
21	ATF2	chr3:119813579-119815036	H1-hESC	embryonic stem cell:	n/a	n/a
22	ATF3	chr3:120067997-120068538	A549	lung:	n/a	chr3:120068263-120068272 chr3:120068276-120068285
23	ATF3	chr3:119814148-119814934	A549	lung:	n/a	n/a
24	ATF3	chr3:119712598-119712857	K562	blood:	n/a	n/a
25	ATF3	chr3:120068081-120068356	K562	blood:	n/a	chr3:120068263-120068272 chr3:120068276-120068285
26	ATF3	chr3:119814413-119814652	K562	blood:	n/a	n/a
27	ATF3	chr3:120003952-120004175	K562	blood:	n/a	chr3:120004006-120004015 chr3:120004018-120004027
28	ATF3	chr3:120068364-120068579	K562	blood:	n/a	n/a
29	ATF3	chr3:119812288-119812947	A549	lung:	n/a	chr3:119812827-119812840
30	ATF3	chr3:119814385-119814789	K562	blood:	n/a	n/a
31	ATF3	chr3:120068003-120068818	GM12878	blood:	n/a	chr3:120068263-120068272 chr3:120068276-120068285
32	BACH1	chr3:119741853-119741871	H1-hESC	embryonic stem cell:	n/a	n/a
33	BACH1	chr3:119722822-119723158	H1-hESC	embryonic stem cell:	n/a	n/a
34	BACH1	chr3:120068116-120068119	K562	blood:	n/a	n/a
35	BACH1	chr3:120060699-120060772	H1-hESC	embryonic stem cell:	n/a	n/a
36	BACH1	chr3:119758794-119759273	H1-hESC	embryonic stem cell:	n/a	n/a
37	BACH1	chr3:120069203-120069565	H1-hESC	embryonic stem cell:	n/a	chr3:120069396-120069410
38	BACH1	chr3:119814253-119814436	H1-hESC	embryonic stem cell:	n/a	n/a
39	BACH1	chr3:120067855-120068693	H1-hESC	embryonic stem cell:	n/a	n/a
40	BACH1	chr3:120003519-120004298	H1-hESC	embryonic stem cell:	n/a	n/a
41	BACH1	chr3:120069214-120069576	K562	blood:	n/a	chr3:120069396-120069410
42	BATF	chr3:119703549-119703743	GM12878	blood:	n/a	chr3:119703673-119703684
43	BATF	chr3:119864428-119864687	GM12878	blood:	n/a	chr3:119864551-119864562
44	BATF	chr3:119864378-119864692	GM12878	blood:	n/a	chr3:119864551-119864562
45	BATF	chr3:119630757-119631026	GM12878	blood:	n/a	n/a
46	BATF	chr3:119656036-119656421	GM12878	blood:	n/a	n/a
47	BATF	chr3:119656704-119657041	GM12878	blood:	n/a	chr3:119656904-119656915
48	BATF	chr3:120031043-120031283	GM12878	blood:	n/a	n/a
49	BATF	chr3:119703567-119703848	GM12878	blood:	n/a	chr3:119703673-119703684
50	BATF	chr3:119814019-119814430	GM12878	blood:	n/a	n/a

(count:4340 , 50 per page) page: 1 2 3 4 5 6 7 ... 87

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:120003884-120003934	SK-N-SH_RA	brain:	n/a
2	chr3:120000135-120000185	SKMC	muscle:	n/a
3	chr3:120007636-120007686	HAEpiC	amniotic membrane:	n/a
4	chr3:119813689-119813739	U87	brain:	n/a
5	chr3:119896128-119896178	PrEC	prostate:	n/a
6	chr3:119911457-119911507	SKMC	muscle:	n/a
7	chr3:119632116-119632166	GM19239	blood:	n/a
8	chr3:119963851-119963901	HAEpiC	amniotic membrane:	n/a
9	chr3:119885187-119885237	Caco-2	colon:	n/a
10	chr3:120003884-120003934	SK-N-SH_RA	brain:	n/a
11	chr3:120000135-120000185	SKMC	muscle:	n/a
12	chr3:120007636-120007686	HAEpiC	amniotic membrane:	n/a
13	chr3:119813689-119813739	U87	brain:	n/a
14	chr3:119896128-119896178	PrEC	prostate:	n/a
15	chr3:119911457-119911507	SKMC	muscle:	n/a
16	chr3:119632116-119632166	GM19239	blood:	n/a
17	chr3:119963851-119963901	HAEpiC	amniotic membrane:	n/a
18	chr3:119885187-119885237	Caco-2	colon:	n/a
19	chr3:120025420-120025470	NH-A	brain:	n/a
20	chr3:120025901-120025951	Hela-S3	cervix:	n/a
21	chr3:120068861-120068911	HCPEpiC	choroid plexus:	n/a
22	chr3:119626443-119626493	ovcar-3	ovarian:	n/a
23	chr3:120003642-120003692	HCM	heart:	n/a
24	chr3:120067732-120067782	NHBE	bronchial:	n/a
25	chr3:120066154-120066204	ovcar-3	ovarian:	n/a
26	chr3:119963802-119963852	HRPEpiC	eye:	n/a
27	chr3:120003292-120003342	AG04449	skin:	fetal
28	chr3:120066154-120066204	K562	blood:	n/a
29	chr3:119963851-119963901	AG04449	skin:	fetal
30	chr3:119896128-119896178	GM19239	blood:	n/a
31	chr3:119885187-119885237	BJ	skin:	n/a
32	chr3:119813689-119813739	HUVEC	blood vessel:	n/a
33	chr3:119889512-119889562	PrEC	prostate:	n/a
34	chr3:120068337-120068387	ovcar-3	ovarian:	n/a
35	chr3:120028889-120028939	NT2-D1	testis:	n/a
36	chr3:120007636-120007686	AoSMC	blood vessel:	n/a
37	chr3:119963132-119963182	AG09309	skin:	n/a
38	chr3:120026258-120026308	AG04450	lung:	fetal
39	chr3:119963208-119963258	GM06990	blood:	n/a
40	chr3:119747339-119747389	ProgFib	skin:	n/a
41	chr3:120025420-120025470	Jurkat	blood:	n/a
42	chr3:120026258-120026308	BJ	skin:	n/a
43	chr3:119814122-119814172	BE2_C	brain:	n/a
44	chr3:120004391-120004441	HEK293	kidney:	embryo
45	chr3:120068337-120068387	GM12878	blood:	n/a
46	chr3:120068385-120068435	U87	brain:	n/a
47	chr3:119877272-119877322	LNCaP	prostate:	n/a
48	chr3:119911457-119911507	HMEC	breast:	n/a
49	chr3:120066154-120066204	AoSMC	blood vessel:	n/a
50	chr3:120068530-120068580	HRPEpiC	eye:	n/a

(count:462 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Distal block	Cell Line	Cell type
1	chr3:119864581..119866968-chr3:119914610..119916835,2	MCF-7	breast:
2	chr3:119813034..119815172-chr3:119836263..119839236,2	K562	blood:
3	chr3:119691668..119693839-chr3:119813000..119814677,2	MCF-7	breast:
4	chr3:119814526..119816268-chr3:119818029..119819760,2	K562	blood:
5	chr12:39300010..39300760-chr3:119814285..119814942,2	Hela-S3	cervix:
6	chr3:119814526..119816268-chr3:119818029..119819760,2	K562	blood:
7	chr3:119832637..119834179-chr3:119912112..119915097,2	MCF-7	breast:
8	chr3:119736524..119739259-chr3:119742014..119746399,5	K562	blood:
9	chr2:202046939..202047742-chr3:119813736..119814466,2	Hela-S3	cervix:
10	chr3:119831403..119834895-chr3:119845302..119848290,3	MCF-7	breast:
11	chr16:699274..700033-chr3:119813658..119814449,2	Hela-S3	cervix:
12	chr3:120032416..120034924-chr3:120037587..120040555,3	MCF-7	breast:
13	chr1:108742013..108742800-chr3:119814585..119815177,2	Hela-S3	cervix:
14	chr3:119592588..119594963-chr3:119598932..119601603,2	K562	blood:
15	chr3:119638009..119638727-chr3:119865735..119866462,2	MCF-7	breast:
16	chr3:119623117..119624885-chr3:119665357..119667174,2	MCF-7	breast:
17	chr3:119797695..119800113-chr3:119802432..119804591,2	K562	blood:
18	chr3:120042552..120044161-chr3:120066684..120068375,2	MCF-7	breast:
19	chr3:119610902..119615180-chr3:119811661..119815075,4	MCF-7	breast:
20	chr3:119610502..119611380-chr3:119901494..119902513,3	MCF-7	breast:
21	chr3:119812621..119817617-chr3:119824950..119830930,7	K562	blood:
22	chr10:104503487..104504043-chr3:120067799..120068315,2	Hela-S3	cervix:
23	chr3:119813918..119814652-chr9:114393205..114394157,2	Hela-S3	cervix:
24	chr3:120055756..120058586-chr3:120065980..120068170,2	K562	blood:
25	chr3:119759351..119761475-chr3:119811751..119814563,3	MCF-7	breast:
26	chr3:119896267..119897823-chr3:119902121..119903746,2	MCF-7	breast:
27	chr3:119742589..119744639-chr3:119769517..119771054,2	MCF-7	breast:
28	chr3:119965381..119968693-chr3:120066604..120068293,3	MCF-7	breast:
29	chr3:120025111..120027109-chr3:120067982..120069603,2	MCF-7	breast:
30	chr12:7052767..7053843-chr3:119813609..119814418,3	Hela-S3	cervix:
31	chr3:120069111..120071997-chr3:120084566..120086906,2	K562	blood:
32	chr3:119794849..119798718-chr3:119811485..119814707,3	K562	blood:
33	chr3:119759351..119761475-chr3:119811751..119814563,3	MCF-7	breast:
34	chr3:119963031..119965012-chr3:119965595..119967635,2	MCF-7	breast:
35	chr3:120047929..120050381-chr3:120059244..120062451,3	MCF-7	breast:
36	chr3:119710167..119712500-chr3:119810883..119812424,2	MCF-7	breast:
37	chr3:120004257..120007006-chr3:120012021..120014996,2	MCF-7	breast:
38	chr3:119746931..119749819-chr3:119754853..119756827,2	MCF-7	breast:
39	chr3:119812228..119813916-chr3:119848759..119851429,2	K562	blood:
40	chr3:119813314..119815193-chr3:120066557..120069483,2	MCF-7	breast:
41	chr3:120066467..120068992-chr3:120105411..120108399,2	MCF-7	breast:
42	chr3:119634774..119636401-chr3:119812734..119815446,2	MCF-7	breast:
43	chr3:119717638..119719374-chr3:119730328..119732914,2	MCF-7	breast:
44	chr19:47615199..47615964-chr3:120067825..120068376,2	NB4	blood:
45	chr3:120025111..120027109-chr3:120067982..120069603,2	MCF-7	breast:
46	chr3:119865007..119867802-chr3:119897494..119899931,3	MCF-7	breast:
47	chr3:119964298..119967056-chr3:119979686..119982261,2	MCF-7	breast:
48	chr3:119611784..119614426-chr3:119616745..119618643,2	MCF-7	breast:
49	chr3:119609509..119613184-chr3:119810237..119814414,6	MCF-7	breast:
50	chr3:119626669..119629157-chr3:119817976..119820663,2	MCF-7	breast:

(count:56 , 50 per page) page: 1 2

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NR1I2-1	chr3:119852422-119852519	XLOC_002779
2	lnc-NR1I2-1	chr3:119817239-119817634	XLOC_002779
3	lnc-NR1I2-6	chr3:119843307-119843461	l_2445_chr3:119843306-119845600_testes
4	lnc-NR1I2-1	chr3:119813742-119813889	ENSG00000242622
5	lnc-NDUFB4-2	chr3:120005001-120005984	XLOC_002780
6	lnc-NR1I2-1	chr3:119814913-119815030	ENSG00000242622
7	lnc-NR1I2-1	chr3:119823623-119823692	ENSG00000242622
8	lnc-NR1I2-1	chr3:119823623-119824125	XLOC_002779
9	lnc-NR1I2-1	chr3:119817561-119818033	ENSG00000242622
10	lnc-NR1I2-1	chr3:119814117-119814625	ENSG00000242622
11	lnc-NR1I2-1	chr3:119855175-119855630	ENSG00000242622
12	lnc-NR1I2-1	chr3:119823623-119824032	XLOC_002779
13	lnc-NR1I2-1	chr3:119817561-119817639	XLOC_002779
14	lnc-NR1I2-1	chr3:119852422-119852519	ENSG00000242622
15	lnc-NR1I2-1	chr3:119817561-119817826	XLOC_002779
16	lnc-NR1I2-1	chr3:119814171-119815030	XLOC_002779
17	lnc-NR1I2-3	chr3:119747587-119748715	NONHSAT091415
18	lnc-GSK3B-1	chr3:119829345-119829633	NONHSAT091427
19	lnc-NR1I2-1	chr3:119813742-119813889	XLOC_002779
20	lnc-NDUFB4-2	chr3:120007109-120008319	XLOC_002780
21	lnc-NR1I2-1	chr3:119814598-119814625	XLOC_002779
22	lnc-NR1I2-1	chr3:119814901-119815030	XLOC_002779
23	lnc-NR1I2-1	chr3:119817561-119817826	XLOC_002779
24	lnc-NR1I2-1	chr3:119823623-119824073	XLOC_002779
25	lnc-NR1I2-1	chr3:119817561-119817826	XLOC_002779
26	lnc-NR1I2-1	chr3:119817722-119817826	XLOC_002779
27	lnc-NR1I2-1	chr3:119844908-119844933	XLOC_002779
28	lnc-NDUFB4-2	chr3:120005583-120005984	NONHSAT091436
29	lnc-GSK3B-2	chr3:119830609-119830872	NONHSAT091428
30	lnc-NR1I2-1	chr3:119813266-119819259	NONHSAT091417
31	lnc-NR1I2-1	chr3:119817561-119817826	XLOC_002779
32	lnc-NR1I2-1	chr3:119814562-119814625	XLOC_002779
33	lnc-NR1I2-1	chr3:119814913-119815030	XLOC_002779
34	lnc-NR1I2-1	chr3:119844908-119844933	XLOC_002779
35	lnc-NR1I2-4	chr3:119760037-119760384	NONHSAT091416
36	lnc-NR1I2-1	chr3:119823623-119824003	NONHSAT091425
37	lnc-LRRC58-4	chr3:120003876-120003921	NONHSAT091433
38	lnc-NR1I2-1	chr3:119823623-119823692	XLOC_002779
39	lnc-NR1I2-1	chr3:119814677-119815030	NONHSAT091425
40	lnc-NR1I2-1	chr3:119817561-119817826	NONHSAT091425
41	lnc-LRRC58-4	chr3:119961707-119962623	NONHSAT091433
42	lnc-NR1I2-6	chr3:119845399-119845600	l_2445_chr3:119843306-119845600_testes
43	lnc-NR1I2-1	chr3:119823623-119824032	XLOC_002779
44	lnc-NR1I2-1	chr3:119855175-119855628	XLOC_002779
45	lnc-GPR156-1	chr3:120044178-120047197	NONHSAT091437
46	lnc-NR1I2-1	chr3:119817561-119819241	XLOC_002779
47	lnc-LRRC58-4	chr3:119962850-119963325	NONHSAT091433
48	lnc-NR1I2-1	chr3:119817561-119817639	XLOC_002779
49	lnc-NR1I2-1	chr3:119814171-119815030	XLOC_002779
50	lnc-NR1I2-1	chr3:119817561-119817639	ENSG00000242622

No data

(count:4 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location
1	LRRC58	hsa-miR-124-3p	chr3:120049354-120049377
2	LRRC58	hsa-miR-124-3p	chr3:120044930-120044949
3	LRRC58	hsa-miR-124-3p	chr3:120044936-120044929
4	LRRC58	hsa-miR-124-3p	chr3:120049360-120049353

Variant related genes	Relation type
ENSG00000206721	TF binding region
ENSG00000240661	TF binding region
ENSG00000241546	TF binding region
RN7SL762P	TF binding region
ENSG00000239835	TF binding region
GSK3B	TF binding region
GPR156	TF binding region
ENSG00000242622	TF binding region
ENSG00000240882	TF binding region
LRRC58	TF binding region
RN7SL397P	TF binding region
ENSG00000206721	CpG island
ENSG00000240661	CpG island
ENSG00000241546	CpG island
RN7SL762P	CpG island
ENSG00000239835	CpG island
GSK3B	CpG island
GPR156	CpG island
ENSG00000242622	CpG island
ENSG00000240882	CpG island
LRRC58	CpG island
RN7SL397P	CpG island
ENSG00000166272	chromatin interactions
ENSG00000248636	chromatin interactions
ENSG00000260879	chromatin interactions
ENSG00000169241	chromatin interactions
ENSG00000244115	chromatin interactions
ENSG00000272173	chromatin interactions
ENSG00000004866	chromatin interactions
ENSG00000197136	chromatin interactions
ENSG00000176142	chromatin interactions
ENSG00000003400	chromatin interactions
ENSG00000121579	chromatin interactions
ENSG00000212195	chromatin interactions
ENSG00000166881	chromatin interactions
ENSG00000166451	chromatin interactions
ENSG00000158711	chromatin interactions
ENSG00000240774	chromatin interactions
ENSG00000257718	chromatin interactions
ENSG00000241546	chromatin interactions
ENSG00000103121	chromatin interactions
ENSG00000200795	chromatin interactions
ENSG00000059769	chromatin interactions
ENSG00000163389	chromatin interactions
ENSG00000136819	chromatin interactions
ENSG00000172115	chromatin interactions
ENSG00000168724	chromatin interactions
ENSG00000221944	chromatin interactions
ENSG00000240882	chromatin interactions
ENSG00000266620	chromatin interactions
ENSG00000247271	chromatin interactions
ENSG00000160211	chromatin interactions
ENSG00000267858	chromatin interactions
ENSG00000135930	chromatin interactions
ENSG00000180806	chromatin interactions
ENSG00000130749	chromatin interactions
ENSG00000136878	chromatin interactions
ENSG00000239835	chromatin interactions
ENSG00000250451	chromatin interactions
ENSG00000244308	chromatin interactions
ENSG00000139117	chromatin interactions
ENSG00000161996	chromatin interactions
ENSG00000238923	chromatin interactions
ENSG00000065518	chromatin interactions
ENSG00000163430	chromatin interactions
ENSG00000240661	chromatin interactions
ENSG00000124693	chromatin interactions
ENSG00000111640	chromatin interactions
ENSG00000123268	chromatin interactions
ENSG00000242613	chromatin interactions
ENSG00000167644	chromatin interactions
ENSG00000111725	chromatin interactions
ENSG00000073009	chromatin interactions
ENSG00000119013	chromatin interactions
ENSG00000175697	chromatin interactions
ENSG00000034510	chromatin interactions
ENSG00000244139	chromatin interactions
ENSG00000214188	chromatin interactions
ENSG00000082701	chromatin interactions
ENSG00000264395	chromatin interactions
ENSG00000138495	chromatin interactions
ENSG00000204173	chromatin interactions
ENSG00000133398	chromatin interactions
ENSG00000242622	chromatin interactions
ENSG00000167930	chromatin interactions
ENSG00000118515	chromatin interactions
ENSG00000163428	chromatin interactions
ENSG00000111678	chromatin interactions
HSPA13	miRNA target sites
NAA30	miRNA target sites
RPAIN	miRNA target sites
FGFR1	miRNA target sites
TAB3	miRNA target sites
SPAG5	miRNA target sites
AKT2	miRNA target sites

Extended variants
information (count: 17175 )
Associated
traits (count: 61 )

Variant overlapped rSNPs/rCNVs (count:17175 , 50 per page) page: 1 2 3 4 5 6 7 ... 344

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs569609573	chr3:119575431-119575432	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs151113349	chr3:119575454-119575455	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs563659711	chr3:119575461-119575462	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs530729379	chr3:119575498-119575499	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs187975021	chr3:119575500-119575501	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs567153459	chr3:119575562-119575563	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs564565428	chr3:119575581-119575582	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs199805432	chr3:119575616-119575617	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs562657942	chr3:119575637-119575638	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs190894153	chr3:119575712-119575713	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs546718822	chr3:119575721-119575722	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs182609013	chr3:119575779-119575780	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs571249267	chr3:119575787-119575788	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs538677881	chr3:119575794-119575795	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs556690023	chr3:119575801-119575802	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs568834169	chr3:119575849-119575850	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs537762370	chr3:119575854-119575855	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs556073598	chr3:119575855-119575856	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs373188976	chr3:119575885-119575886	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs141048190	chr3:119575962-119575963	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs541256240	chr3:119575979-119575980	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs187678161	chr3:119575986-119575987	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs553484724	chr3:119576016-119576017	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs377462352	chr3:119576060-119576061	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs80329840	chr3:119576120-119576121	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs150232754	chr3:119576128-119576129	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs563555905	chr3:119576204-119576205	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs138825587	chr3:119576213-119576214	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs370985908	chr3:119576214-119576215	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs142004469	chr3:119576251-119576252	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs527940163	chr3:119576274-119576275	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs374315029	chr3:119576332-119576333	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs74599863	chr3:119576346-119576347	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs527275416	chr3:119576377-119576378	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs192792378	chr3:119576384-119576385	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs546477308	chr3:119576424-119576425	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs184844257	chr3:119576529-119576530	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs547302735	chr3:119576536-119576537	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs187483523	chr3:119576554-119576555	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs568897850	chr3:119576578-119576579	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs192196714	chr3:119576583-119576584	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs556135243	chr3:119576596-119576597	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs371831026	chr3:119576641-119576642	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs369179764	chr3:119576696-119576697	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs115723352	chr3:119576730-119576731	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs1626696	chr3:119576769-119576770	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs553307560	chr3:119576786-119576787	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs146888713	chr3:119576813-119576814	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs543574972	chr3:119576834-119576835	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs138265009	chr3:119576860-119576861	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:61)

Disease	PMID	Source
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
microdeletion syndrome	22180640	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	16608533	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Developmental delay	22180640	CNVD
Multiple myeloma	17550852	CNVD
Basal cell lymphoma	21115979	CNVD
Ovarian cancer	22174824	CNVD
lymphocytic leukemia	21291569	CNVD
small cell lung cancer	20016488	CNVD
Cancer	20164920	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Glioblastoma multiforme	22286061	CNVD
Neurodevelopmental disorder	22521361	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:9193 , 50 per page) page: 1 2 3 4 5 6 7 ... 184

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119529600-119582000	Weak transcription	Spleen	Spleen
2	chr3:119536600-119576000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr3:119536600-119576400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:119539000-119576400	Weak transcription	Ovary	ovary
5	chr3:119540400-119576600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr3:119540800-119577000	Weak transcription	Aorta	Aorta
7	chr3:119541000-119581600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr3:119541200-119587000	Weak transcription	Gastric	stomach
9	chr3:119542400-119581200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr3:119542600-119581600	Weak transcription	HUVEC	blood vessel
11	chr3:119545000-119576400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr3:119545200-119575400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr3:119545200-119583400	Weak transcription	Brain Angular Gyrus	brain
14	chr3:119545800-119576400	Weak transcription	Brain Germinal Matrix	brain
15	chr3:119545800-119581600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr3:119546000-119576400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr3:119546000-119663400	Weak transcription	Lung	lung
18	chr3:119546400-119580400	Weak transcription	HepG2	liver
19	chr3:119548600-119576600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr3:119548600-119581600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr3:119549000-119577200	Weak transcription	Small Intestine	intestine
22	chr3:119549200-119581600	Weak transcription	Brain Hippocampus Middle	brain
23	chr3:119551200-119576200	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr3:119551200-119576800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr3:119551400-119594600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr3:119551800-119580600	Weak transcription	NH-A	brain
27	chr3:119551800-119581400	Weak transcription	Osteobl	bone
28	chr3:119552000-119575600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr3:119552200-119576400	Weak transcription	A549	lung
30	chr3:119552200-119576600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr3:119552200-119577000	Weak transcription	HSMMtube	muscle
32	chr3:119552200-119582000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr3:119554000-119576000	Weak transcription	Fetal Intestine Large	intestine
34	chr3:119557400-119576200	Weak transcription	NHEK	skin
35	chr3:119560000-119576200	Weak transcription	HMEC	breast
36	chr3:119560200-119576000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr3:119560400-119576400	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr3:119560400-119576800	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr3:119561200-119581400	Weak transcription	Hela-S3	cervix
40	chr3:119561200-119581600	Weak transcription	Right Ventricle	heart
41	chr3:119561200-119581600	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr3:119561200-119591200	Weak transcription	Stomach Mucosa	stomach
43	chr3:119562400-119576200	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr3:119562400-119576600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr3:119562400-119576800	Weak transcription	Left Ventricle	heart
46	chr3:119562400-119577000	Weak transcription	Thymus	Thymus
47	chr3:119562400-119611000	Weak transcription	Fetal Stomach	stomach
48	chr3:119562600-119576000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr3:119562600-119576600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr3:119562600-119576600	Weak transcription	Psoas Muscle	Psoas

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